Draft genome sequence of Kei apple, an underutilized African tree crop

被引:0
作者
Kariba, Robert [1 ]
Waweru, Bernice [2 ,3 ]
Njaci, Isaac [2 ,4 ]
Banda, Linly [5 ]
Mwangi, Jenniffer W. [6 ]
Harimanantso, R. Antso [7 ]
Muthemba, Samuel [1 ]
Featherstone, Jonathan [8 ]
Hendre, Prasad [1 ]
Jamnadass, Ramni [1 ]
Van Deynze, Allen [9 ]
Domelevo Entfellner, Jean-Baka [2 ]
Shorinola, Oluwaseyi [2 ,10 ]
机构
[1] World Agroforestry, POB 30677, Nairobi 00100, Kenya
[2] Int Livestock Res Inst, POB 30709, Nairobi 00100, Kenya
[3] John Innes Ctr, Norwich Res Pk, Norwich NR4 7UH, England
[4] Univ Queensland, Sch Agr & Food Sustainabil, Brisbane, Qld, Australia
[5] Colorado State Univ, Dept Hort & Landscape Architecture, Ft Collins, CO USA
[6] Machakos Univ, Sch Pure & Appl Sci, POB 136, Machakos 90100, Kenya
[7] Univ Antananarivo, Fac Sci, BP 906, Antananarivo 101, Madagascar
[8] Agr Res Council, Biotechnol Platform, ZA-0110 Pretoria, South Africa
[9] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA
[10] Univ Birmingham, Sch Biosci, Birmingham B15 2TT, England
基金
英国生物技术与生命科学研究理事会;
关键词
ALIGNMENT; DATABASE;
D O I
10.1038/s41597-025-04414-0
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
To address food and nutrition security in the face of burgeoning global populations and erratic climatic conditions there is a need to include nutrient dense, climatic resilient but neglected indigenous fruit trees in agrifood systems. Here we present the draft genome sequence of Kei Apple, Dovyalis afra, a neglected indigenous African fruit tree with untapped potential to contribute to nutrient security and improved livelihoods. Our long-read-based genome assembly comprises 440 Mbp sequence across 1190 contigs with a N50 and L50 of 13.3 Mbp and 11, respectively. We also annotated the genome and identified 27,449 protein-coding genes. Our genome assembly provides a valuable resource for unlocking the food security and nutraceutical potential of Kei apple.
引用
收藏
页数:7
相关论文
共 52 条
  • [1] [Anonymous], 2024, EUROPEAN NUCLEOTIDE
  • [2] [Anonymous], 2024, NCBI GenBank
  • [3] [Anonymous], 2024, NCBI Sequence Read Archive
  • [4] Ethnobotanical uses, biological activities and chemical properties of Kei-apple [Dovyalis caffra (Hook.f. & Harv.) Sim]: An indigenous fruit tree of southern Africa
    Aremu, Adeyemi Oladapo
    Ncama, Khayelihle
    Omotayo, Abiodun Olusola
    [J]. JOURNAL OF ETHNOPHARMACOLOGY, 2019, 241
  • [5] Bessong PO, 2006, AFR J BIOTECHNOL, V5, P526
  • [6] The ProDom database of protein domain families: more emphasis on 3D
    Bru, C
    Courcelle, E
    Carrre, S
    Beausse, Y
    Dalmar, S
    Kahn, D
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D212 - D215
  • [7] eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale
    Cantalapiedra, Carlos P.
    Hernandez-Plaza, Ana
    Letunic, Ivica
    Bork, Peer
    Huerta-Cepas, Jaime
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2021, 38 (12) : 5825 - 5829
  • [8] The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
    Cantarel, Brandi L.
    Coutinho, Pedro M.
    Rancurel, Corinne
    Bernard, Thomas
    Lombard, Vincent
    Henrissat, Bernard
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : D233 - D238
  • [9] The Gene Ontology Resource: 20 years and still GOing strong
    Carbon, S.
    Douglass, E.
    Dunn, N.
    Good, B.
    Harris, N. L.
    Lewis, S. E.
    Mungall, C. J.
    Basu, S.
    Chisholm, R. L.
    Dodson, R. J.
    Hartline, E.
    Fey, P.
    Thomas, P. D.
    Albou, L. P.
    Ebert, D.
    Kesling, M. J.
    Mi, H.
    Muruganujian, A.
    Huang, X.
    Poudel, S.
    Mushayahama, T.
    Hu, J. C.
    LaBonte, S. A.
    Siegele, D. A.
    Antonazzo, G.
    Attrill, H.
    Brown, N. H.
    Fexova, S.
    Garapati, P.
    Jones, T. E. M.
    Marygold, S. J.
    Millburn, G. H.
    Rey, A. J.
    Trovisco, V.
    dos Santos, G.
    Emmert, D. B.
    Falls, K.
    Zhou, P.
    Goodman, J. L.
    Strelets, V. B.
    Thurmond, J.
    Courtot, M.
    Osumi-Sutherland, D.
    Parkinson, H.
    Roncaglia, P.
    Acencio, M. L.
    Kuiper, M.
    Laegreid, A.
    Logie, C.
    Lovering, R. C.
    [J]. NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) : D330 - D338
  • [10] Costa V., 2019, The Fever Tree: Extracting And Preparing The DNA Of Cinchona Pubescens