Predicting human miRNA disease association with minimize matrix nuclear norm

被引:1
|
作者
Toprak, Ahmet [1 ]
机构
[1] Selcuk Univ, Dept Elect & Energy, Konya, Turkiye
来源
SCIENTIFIC REPORTS | 2024年 / 14卷 / 01期
关键词
MiRNA; Disease; MiRNA-disease associations; Matrix decomposition; Matrix nuclear norm; MICRORNAS; CANCER;
D O I
10.1038/s41598-024-81213-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
microRNAs (miRNAs) are non-coding RNA molecules that influence the development and progression of many diseases. Research have documented that miRNAs have a significant role in the prevention, diagnosis, and treatment of complex human diseases. Recently, scientists have devoted extensive resources to attempting to find the connections between miRNAs and diseases. Since the experimental methods used to discover that new miRNA-disease associations are time-consuming and expensive, many computational methods have been developed. In this research, a novel computational method based on matrix decomposition was proposed to predict new associations between miRNAs and diseases. Furthermore, the nuclear norm minimization method was employed to acquire breast cancer-associated miRNAs. We then evaluated the effectiveness of our method by utilizing two different cross-validation techniques and the results were compared to seven different methods. Moreover, a case study on breast cancer further validated our technique, confirming its predictive accuracy. These experimental results demonstrate that our method is a reliable computational model for uncovering potential miRNA-disease relationships.
引用
收藏
页数:10
相关论文
共 50 条
  • [21] ILPMDA: Predicting miRNA-Disease Association Based on Improved Label Propagation
    Wang, Yu-Tian
    Li, Lei
    Ji, Cun-Mei
    Zheng, Chun-Hou
    Ni, Jian-Cheng
    FRONTIERS IN GENETICS, 2021, 12
  • [22] Predicting MiRNA-Disease Association by Latent Feature Extraction with Positive Samples
    Che, Kai
    Guo, Maozu
    Wang, Chunyu
    Liu, Xiaoyan
    Chen, Xi
    GENES, 2019, 10 (02):
  • [23] Predicting miRNA-disease association through combining miRNA function and network topological similarities based on MINE
    Cao, Buwen
    Li, Renfa
    Xiao, Sainan
    Deng, Shuguang
    Zhou, Xiangjun
    Zhou, Lang
    ISCIENCE, 2022, 25 (11)
  • [24] Prediction of miRNA-disease association based on multisource inductive matrix completion
    Wang, Yawei
    Yin, Zhixiang
    SCIENTIFIC REPORTS, 2024, 14 (01):
  • [25] DISTRIBUTED NUCLEAR NORM MINIMIZATION FOR MATRIX COMPLETION
    Mardani, Morteza
    Mateos, Gonzalo
    Giannakis, Georgios B.
    2012 IEEE 13TH INTERNATIONAL WORKSHOP ON SIGNAL PROCESSING ADVANCES IN WIRELESS COMMUNICATIONS (SPAWC), 2012, : 354 - 358
  • [26] Matrix Completion by Truncated Nuclear Norm Regularization
    Zhang, Debing
    Hu, Yao
    Ye, Jieping
    Li, Xuelong
    He, Xiaofei
    2012 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2012, : 2192 - 2199
  • [27] Feature and Nuclear Norm Minimization for Matrix Completion
    Yang, Mengyun
    Li, Yaohang
    Wang, Jianxin
    IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 2022, 34 (05) : 2190 - 2199
  • [28] Matrix completion via capped nuclear norm
    Zhang, Fanlong
    Yang, Zhangjing
    Chen, Yu
    Yang, Jian
    Yang, Guowei
    IET IMAGE PROCESSING, 2018, 12 (06) : 959 - 966
  • [29] MDSCMF: Matrix Decomposition and Similarity-Constrained Matrix Factorization for miRNA-Disease Association Prediction
    Ni, Jiancheng
    Li, Lei
    Wang, Yutian
    Ji, Cunmei
    Zheng, Chunhou
    GENES, 2022, 13 (06)
  • [30] DGAMDA: Predicting miRNA-disease association based on dynamic graph attention network
    Jia, Changxin
    Wang, Fuyu
    Xing, Baoxiang
    Li, Shaona
    Zhao, Yang
    Li, Yu
    Wang, Qing
    INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING, 2024, 40 (05)