The first mitochondrial genomes of stylasterid corals (Hydrozoa; Stylasteridae) and their phylogenetic position

被引:0
作者
Pica, Daniela [1 ]
Pica, Claudio [2 ]
Vaga, Claudia F. [3 ]
机构
[1] Stn Zool Anton Dohrn CRIMAC, Calabria Marine Ctr, Dept Integrat Marine Ecol, I-87071 Amendolara, CS, Italy
[2] Univ Southern Denmark, Dept Math & Comp Sci, Campusvej 55, Odense, Denmark
[3] Smithsonian Inst, Dept Invertebrate Zool, Washington, DC 20560 USA
关键词
Deep sea; Gene order; Phylogenetic analysis; Mediterranean Sea; Errina; mtDNA; SELECTION;
D O I
10.1007/s11033-025-10324-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
BackgroundMitochondrial genomes among Medusozoa show considerable variation in the class Hydrozoa, and many phylogenetic relationships inside the subphylum remain still unresolved. Stylasteridae, one of the most species-rich families among hydrozoans, characterized by a calcareous skeleton, lacks mitochondrial genomic information, limiting our understanding of their evolution and phylogenetic position within Hydrozoa.Methods and resultsThis study present the first mitochondrial genome of two stylasterid species from the genus Errina (E. aspera and E. atlantica). Total genomic DNA was extracted and sequenced using Illumina NovaSeq 6000 and mitochondrial genomes were assembled and annotated using two different methods. Results hypothesized linear genomes of 14,938 bp and 14,969 bp respectively, containing 13 protein-coding genes, 2 transfer RNA genes, and 2 ribosomal RNA genes. The gene order was congruent with other Filifera, but lacking the cox1 duplication, transposition, and inversion common in other hydrozoans. Phylogenetic analyses confirmed the position of stylasterids as a sister group to Hydractiniidae within the Filifera suborder.ConclusionsThis study provides the first information about the stylasterid mitochondrial genome structure. Moreover, the phylogenetic analysis confirms the phylogenetic position of Hydractiniidae as sister family of Stylasteridae. The new findings have highlighted the importance of sequencing additional genomic data to better unravel the evolutionary history of this significant family.
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共 24 条
  • [1] MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics
    Allio, Remi
    Schomaker-Bastos, Alex
    Romiguier, Jonathan
    Prosdocimi, Francisco
    Nabholz, Benoit
    Delsuc, Frederic
    [J]. MOLECULAR ECOLOGY RESOURCES, 2020, 20 (04) : 892 - 905
  • [2] Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes
    Anisimova, Maria
    Gil, Manuel
    Dufayard, Jean-Francois
    Dessimoz, Christophe
    Gascuel, Olivier
    [J]. SYSTEMATIC BIOLOGY, 2011, 60 (05) : 685 - 699
  • [3] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [4] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [5] Global Diversity of the Stylasteridae (Cnidaria: Hydrozoa: Athecatae)
    Cairns, Stephen D.
    [J]. PLOS ONE, 2011, 6 (07):
  • [6] Phylogenetics of Hydroidolina (Hydrozoa: Cnidaria)
    Cartwright, Paulyn
    Evans, Nathaniel M.
    Dunn, Casey W.
    Marques, Antonio C.
    Miglietta, Maria Pia
    Schuchert, Peter
    Collins, Allen G.
    [J]. JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM, 2008, 88 (08) : 1663 - 1672
  • [7] Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    Castresana, J
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (04) : 540 - 552
  • [8] The phylum Cnidaria: A review of phylogenetic patterns and diversity 300 years after Linnaeus
    Daly, Marymegan
    Brugler, Mercer R.
    Cartwright, Paulyn
    Collins, Allen G.
    Dawson, Michael N.
    Fautin, Daphne G.
    France, Scott C.
    Mcfadden, Catherine S.
    Opresko, Dennis M.
    Rodriguez, Estefania
    Romano, Sandra L.
    Stake, Joel L.
    [J]. ZOOTAXA, 2007, (1668) : 127 - 182
  • [9] Phylogeny.fr: robust phylogenetic analysis for the non-specialist
    Dereeper, A.
    Guignon, V.
    Blanc, G.
    Audic, S.
    Buffet, S.
    Chevenet, F.
    Dufayard, J. -F.
    Guindon, S.
    Lefort, V.
    Lescot, M.
    Claverie, J. -M.
    Gascuel, O.
    [J]. NUCLEIC ACIDS RESEARCH, 2008, 36 : W465 - W469
  • [10] BLAST-EXPLORER helps you building datasets for phylogenetic analysis
    Dereeper, Alexis
    Audic, Stephane
    Claverie, Jean-Michel
    Blanc, Guillaume
    [J]. BMC EVOLUTIONARY BIOLOGY, 2010, 10