Identification of drought stress-responsive genes in Korean fir (Abies koreana) through comparative RNA-seq analysis

被引:0
作者
Park, Hyeong Cheol [1 ]
Hwang, Jung Eun [2 ]
机构
[1] Natl Inst Ecol, Bur Conservat Res, Div Ecol Applicat Res, Ecol Technol Res Team, Seocheon 33657, South Korea
[2] Natl Inst Ecol, Res Ctr Endangered Species, Div Restorat Res, Yeongyang 36531, South Korea
关键词
Abies koreana; Drought stress; Gene ontology classification; Transcription factor; Transcriptomic analysis;
D O I
10.1007/s11816-024-00941-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Abies koreana, an endangered species sensitive to drought, faces severe decline due to climate change-induced water deficit. In this study, we performed a comprehensive transcriptomic analysis of A. koreana under drought stress. RNA-seq data analysis revealed 85,403 contigs of extended lengths, indicative of a high-quality assembly. Gene Ontology classification revealed strong drought stress-responsive regulation of unigenes associated with various biological processes, cellular components, and molecular functions. Gene expression levels showed variation at different time points, indicating a nuanced plant response. Numerous transcription factors, notably those belonging to ERF, MYB, LBD, and NAC families, were identified, underscoring their critical roles in drought tolerance. Finally, qRT-PCR validation confirmed the reliability of RNA-seq data. Overall, this study reveals candidate genes required for drought tolerance in A. koreana, thus supporting future tree breeding programs for effective forest management.
引用
收藏
页码:927 / 938
页数:12
相关论文
共 39 条
  • [1] Differential Gene Expression Reveals Candidate Genes for Drought Stress Response in Abies alba (Pinaceae)
    Behringer, David
    Zimmermann, Heike
    Ziegenhagen, Birgit
    Liepelt, Sascha
    [J]. PLOS ONE, 2015, 10 (04):
  • [2] The Transcriptomic Responses of Pinus massoniana to Drought Stress
    Du, Mingfeng
    Ding, Guijie
    Cai, Qiong
    [J]. FORESTS, 2018, 9 (06)
  • [3] Transcriptome analysis of Pinus halepensis under drought stress and during recovery
    Fox, Hagar
    Doron-Faigenboim, Adi
    Kelly, Gilor
    Bourstein, Ronny
    Attia, Ziv
    Zhou, Jing
    Moshe, Yosef
    Moshelion, Menachem
    David-Schwartz, Rakefet
    [J]. TREE PHYSIOLOGY, 2018, 38 (03) : 423 - 441
  • [4] Transcriptomic Analysis of Drought Stress Responses in Ammopiptanthus mongolicus Leaves Using the RNA-Seq Technique
    Gao, Fei
    Wang, Jianyue
    Wei, Shanjun
    Li, Zhanglei
    Wang, Ning
    Li, Huayun
    Feng, Jinchao
    Li, Hongjie
    Zhou, Yijun
    Zhang, Feixiong
    [J]. PLOS ONE, 2015, 10 (04):
  • [5] Identification and Expression Analysis of LBD Genes in Moso Bamboo (Phyllostachys edulis)
    Gao, Yameng
    Wang, Kang
    Wang, Ruijia
    Wang, Linna
    Liu, Hongxia
    Wu, Min
    Xiang, Yan
    [J]. JOURNAL OF PLANT GROWTH REGULATION, 2022, 41 (07) : 2798 - 2817
  • [6] George S., 2017, Plant Gene, V12, P114, DOI [10.1016/j.plgene.2017.09.004, DOI 10.1016/J.PLGENE.2017.09.004]
  • [7] High-throughput functional annotation and data mining with the Blast2GO suite
    Gotz, Stefan
    Garcia-Gomez, Juan Miguel
    Terol, Javier
    Williams, Tim D.
    Nagaraj, Shivashankar H.
    Nueda, Maria Jose
    Robles, Montserrat
    Talon, Manuel
    Dopazo, Joaquin
    Conesa, Ana
    [J]. NUCLEIC ACIDS RESEARCH, 2008, 36 (10) : 3420 - 3435
  • [8] Full-length transcriptome assembly from RNA-Seq data without a reference genome
    Grabherr, Manfred G.
    Haas, Brian J.
    Yassour, Moran
    Levin, Joshua Z.
    Thompson, Dawn A.
    Amit, Ido
    Adiconis, Xian
    Fan, Lin
    Raychowdhury, Raktima
    Zeng, Qiandong
    Chen, Zehua
    Mauceli, Evan
    Hacohen, Nir
    Gnirke, Andreas
    Rhind, Nicholas
    di Palma, Federica
    Birren, Bruce W.
    Nusbaum, Chad
    Lindblad-Toh, Kerstin
    Friedman, Nir
    Regev, Aviv
    [J]. NATURE BIOTECHNOLOGY, 2011, 29 (07) : 644 - U130
  • [9] Regulatory network established by transcription factors transmits drought stress signals in plant
    Hu, Yongfeng
    Chen, Xiaoliang
    Shen, Xiangling
    [J]. STRESS BIOLOGY, 2022, 2 (01):
  • [10] Transcription Factor ERF194 Modulates the Stress-Related Physiology to Enhance Drought Tolerance of Poplar
    Huan, Xuhui
    Wang, Xingqi
    Zou, Shengqiang
    Zhao, Kai
    Han, Youzhi
    Wang, Shengji
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (01)