In this work, we analyze the spectral ζ\documentclass[12pt]{minimal}
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\begin{document}$$\zeta $$\end{document}-function associated with the self-adjoint extensions, TA,B\documentclass[12pt]{minimal}
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\begin{document}$$T_{A,B}$$\end{document}, of quasi-regular Sturm–Liouville operators that are bounded from below. By utilizing the Green’s function formalism, we find the characteristic function, which implicitly provides the eigenvalues associated with a given self-adjoint extension TA,B\documentclass[12pt]{minimal}
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\begin{document}$$T_{A,B}$$\end{document}. The characteristic function is then employed to construct a contour integral representation for the spectral ζ\documentclass[12pt]{minimal}
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\begin{document}$$\zeta $$\end{document}-function of TA,B\documentclass[12pt]{minimal}
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\begin{document}$$T_{A,B}$$\end{document}. By assuming a general form for the asymptotic expansion of the characteristic function, we describe the analytic continuation of the ζ\documentclass[12pt]{minimal}
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\begin{document}$$\zeta $$\end{document}-function to a larger region of the complex plane. We also present a method for computing the value of the spectral ζ\documentclass[12pt]{minimal}
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\begin{document}$$\zeta $$\end{document}-function of TA,B\documentclass[12pt]{minimal}
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\begin{document}$$T_{A,B}$$\end{document} at all positive integers. We provide two examples to illustrate the methods developed in the paper: the generalized Bessel and Legendre operators. We show that in the case of the generalized Bessel operator, the spectral ζ\documentclass[12pt]{minimal}
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\begin{document}$$\zeta $$\end{document}-function develops a branch point at the origin, while in the case of the Legendre operator it presents, more remarkably, branch points at every nonpositive integer value of s.