Genomic analysis of an acute gastroenteritis outbreak caused by rotavirus C in Hebei, China

被引：0
作者：
Wang, Kaiying [1 ]
Wang, Yun [2 ]
Yang, Lang [1 ]
Li, Jinhui [1 ]
Li, Peihan [1 ]
Yang, Chaojie [1 ]
Jia, Leili [1 ]
Qiu, Shaofu [1 ]
Song, Hongbin [1 ]
Li, Peng [1 ]
机构：
[1] Chinese PLA Ctr Dis Control & Prevent, 20 Dongda St, Beijing 100071, Peoples R China
[2] Tianjin Binhai New Area Ctr Dis Control & Prevent, Tianjin 300450, Peoples R China
来源：
VIROLOGY JOURNAL | 2024年 / 21卷 / 01期
基金：
国家重点研发计划;
关键词：
Human rotavirus C; Phylogenetic analysis; Genetic recombination; GENETIC-ANALYSIS; CHILDREN; STRAINS; DIARRHEA;
D O I：
10.1186/s12985-024-02486-9
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
Rotavirus group C is an important cause of sporadic cases and outbreaks of gastroenteritis worldwide. Whole-Genome sequences of human rotavirus C (RVC) in public databases are limited. We performed genome sequencing to analyze a RVC outbreak of acute gastroenteritis in China. Samples from 22 patients were screened for pathogens using RT-PCR, and six samples were positive for rotavirus. Whole-Genome sequencing analysis showed that the outbreak strain SJZ217 belongs to the G4-P[2]-I2-R2-C2-M3-A2-N2-T2-E2-H2 genotype and shares almost identical genomic sequences with Chungnam isolated in Korea. Phylogenetic analysis revealed strain SJZ217 also fell into a cluster with rotavirus C strains from Japan and Europe. Reassortment in the VP4 fragment was observed. These results helped to understand the genetic diversity and possible spread of RVC strains.
引用
收藏
页数：7
相关论文
共 48 条
  • [1] Full genomic characterization of a group C rotavirus isolated from a child in south Korea
    Baek, In Hyuk
    Van Thai Than
    Kim, Hakyoung
    Lim, Inseok
    Kim, Wonyong
    [J]. JOURNAL OF MEDICAL VIROLOGY, 2013, 85 (08) : 1478 - 1484
  • [2] Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6]VP4 gene
    Bányai, K
    Martella, V
    Jakab, F
    Melegh, B
    Szücs, G
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (09) : 4338 - 4343
  • [3] Population Impact and Effectiveness of Monovalent Rotavirus Vaccination in Urban Malawian Children 3 Years After Vaccine Introduction: Ecological and Case-Control Analyses
    Bar-Zeev, Naor
    Jere, Khuzwayo C.
    Bennett, Aisleen
    Pollock, Louisa
    Tate, Jacqueline E.
    Nakagomi, Osamu
    Iturriza-Gomara, Miren
    Costello, Anthony
    Mwansambo, Charles
    Parashar, Umesh D.
    Heyderman, Robert S.
    French, Neil
    Cunliffe, Nigel A.
    [J]. CLINICAL INFECTIOUS DISEASES, 2016, 62 : S213 - S219
  • [4] Detection and Characterization of Group C Rotavirus in Buenos Aires, Argentina, 1997-2003
    Castello, Alejandro A.
    Arguelles, Marcelo H.
    Rota, Rosana P.
    Humphrey, Charles D.
    Olthoff, Alicia
    Gentsch, Jon R.
    Glass, Roger I.
    Glikmann, Graciela
    Jiang, Baoming
    [J]. JOURNAL OF MEDICAL VIROLOGY, 2009, 81 (06) : 1109 - 1116
  • [5] Whole-Genome Sequences of Two Rare Human Group C Rotavirus Strains Isolated from Two Cases of Acute Gastroenteritis
    Chen, Long
    Zhao, De-Jian
    Yang, Hong
    Zhang, Hai-Long
    Yao, Xiang-Jie
    Zhang, Ren-Li
    He, Ya-Qing
    [J]. GENOME ANNOUNCEMENTS, 2015, 3 (05)
  • [6] Viral genome sequencing by random priming methods
    Djikeng, Appolinaire
    Halpin, Rebecca
    Kuzmickas, Ryan
    DePasse, Jay
    Feldblyum, Jeremy
    Sengamalay, Naomi
    Afonso, Claudio
    Zhang, Xinsheng
    Anderson, Norman G.
    Ghedin, Elodie
    Spiro, David J.
    [J]. BMC GENOMICS, 2008, 9 (1)
  • [7] Genetic analysis of human rotavirus C: The appearance of Indian-Bangladeshi strain in Far East Asian countries
    Doan, Yen Hai
    Haga, Kei
    Fujimoto, Akira
    Fujii, Yoshiki
    Takai-Todaka, Reiko
    Oka, Tomoichiro
    Kimura, Hirokazu
    Yoshizumi, Shima
    Shigemoto, Naoki
    Okamoto-Nakagawa, Reiko
    Shirabe, Komei
    Shinomiya, Hiroto
    Sakon, Naomi
    Katayama, Kazuhiko
    [J]. INFECTION GENETICS AND EVOLUTION, 2016, 41 : 160 - 173
  • [8] Review of global rotavirus strain prevalence data from six years post vaccine licensure surveillance: Is there evidence of strain selection from vaccine pressure?
    Doro, Renata
    Laszlo, Brigitta
    Martella, Vito
    Leshem, Eyal
    Gentsch, Jon
    Parashar, Umesh
    Banyai, Krisztian
    [J]. INFECTION GENETICS AND EVOLUTION, 2014, 28 : 446 - 461
  • [9] Rotavirus typing methods and algorithms
    Fischer, TK
    Gentsch, JR
    [J]. REVIEWS IN MEDICAL VIROLOGY, 2004, 14 (02) : 71 - 82
  • [10] Improvement of Rotavirus Genotyping Method by Using the Semi-Nested Multiplex-PCR With New Primer Set
    Fujii, Yoshiki
    Doan, Yen Hai
    Wahyuni, Rury Mega
    Lusida, Maria Inge
    Utsumi, Takako
    Shoji, Ikuo
    Katayama, Kazuhiko
    [J]. FRONTIERS IN MICROBIOLOGY, 2019, 10
12345