lncRNA NORAD modulates STAT3/STAT1 balance and innate immune responses in human cells via interaction with STAT3

被引:3
作者
Argoetti, Amir [1 ]
Shalev, Dor [1 ]
Polyak, Galia [1 ]
Shima, Noa [1 ]
Biran, Hadas [2 ]
Lahav, Tamar [1 ]
Hashimshony, Tamar [1 ]
Mandel-Gutfreund, Yael [1 ,2 ]
机构
[1] Technion Israel Inst Technol, Fac Biol, Emerson Bldg, Haifa, Israel
[2] Technion Israel Inst Technol, Fac Comp Sci, Taub Bldg, Haifa, Israel
基金
以色列科学基金会;
关键词
LONG NONCODING RNA; EMBRYONIC STEM-CELLS; ANTIVIRAL RESPONSES; PLURIPOTENCY; ULTRAFAST; EVOLUTION; CHROMATIN; GRANULES; BINDING; DNA;
D O I
10.1038/s41467-025-55822-0
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Long non-coding RNAs (lncRNAs) are pivotal regulators of cellular processes. Here we reveal an interaction between the lncRNA NORAD, noted for its role in DNA stability, and the immune related transcription factor STAT3 in embryonic and differentiated human cells. Results from NORAD knockdown experiments implicate NORAD in facilitating STAT3 nuclear localization and suppressing antiviral gene activation. In NORAD-deficient cells, STAT3 remains cytoplasmic, allowing STAT1 to enhance antiviral activity. Analysis of RNA expression data from in vitro experiments and clinical samples demonstrates reduced NORAD upon viral infection. Additionally, evolutionary conservation analysis suggests that this regulatory function of NORAD is restricted to humans, potentially owing to the introduction of an Alu element in hominoids. Our findings thus suggest that NORAD functions as a modulator of STAT3-mediated immune suppression, adding to the understanding of lncRNAs in immune regulation and evolutionary adaptation in host defense mechanisms.
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页数:14
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共 70 条
[1]   The long non-coding RNA LUCAT1 is a negative feedback regulator of interferon responses in humans [J].
Agarwal, Shiuli ;
Vierbuchen, Tim ;
Ghosh, Sreya ;
Chan, Jennie ;
Jiang, Zhaozhao ;
Kandasamy, Richard K. ;
Ricci, Emiliano ;
Fitzgerald, Katherine A. .
NATURE COMMUNICATIONS, 2020, 11 (01)
[2]   Human feeder layers for human embryonic stem cells [J].
Amit, M ;
Margulets, V ;
Segev, H ;
Shariki, K ;
Laevsky, I ;
Coleman, R ;
Itskovitz-Eldor, J .
BIOLOGY OF REPRODUCTION, 2003, 68 (06) :2150-2156
[3]   HTSeq-a Python']Python framework to work with high-throughput sequencing data [J].
Anders, Simon ;
Pyl, Paul Theodor ;
Huber, Wolfgang .
BIOINFORMATICS, 2015, 31 (02) :166-169
[4]   RNase L promotes the formation of unique ribonucleoprotein granules distinct from stress granules [J].
Burke, James M. ;
Lester, Evan T. ;
Tauber, Devin ;
Parker, Roy .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2020, 295 (06) :1426-1438
[5]  
Butler Daniel, 2021, Nat Commun, V12, P1660, DOI [10.1101/2020.04.20.048066, 10.1038/s41467-021-21361-7]
[6]   Dynamics of the STAT3 Transcription Factor: Nuclear Import Dependent on Ran and Importin-β1 [J].
Cimica, Velasco ;
Chen, Hui-Chen ;
Iyer, Janaki K. ;
Reich, Nancy C. .
PLOS ONE, 2011, 6 (05)
[7]   STAR: ultrafast universal RNA-seq aligner [J].
Dobin, Alexander ;
Davis, Carrie A. ;
Schlesinger, Felix ;
Drenkow, Jorg ;
Zaleski, Chris ;
Jha, Sonali ;
Batut, Philippe ;
Chaisson, Mark ;
Gingeras, Thomas R. .
BIOINFORMATICS, 2013, 29 (01) :15-21
[8]   TREX reveals proteins that bind to specific RNA regions in living cells [J].
Dodel, Martin ;
Guiducci, Giulia ;
Dermit, Maria ;
Krishnamurthy, Sneha ;
Alard, Emilie L. ;
Capraro, Federica ;
Rekad, Zeinab ;
Stojic, Lovorka ;
Mardakheh, Faraz K. .
NATURE METHODS, 2024, 21 (03) :423-434
[9]   Uncovering the RNA-binding protein landscape in the pluripotency network of human embryonic stem cells [J].
Dvir, Shlomi ;
Argoetti, Amir ;
Lesnik, Chen ;
Roytblat, Mark ;
Shriki, Kohava ;
Amit, Michal ;
Hashimshony, Tamar ;
Mandel-Gutfreund, Yael .
CELL REPORTS, 2021, 35 (09)
[10]   Type I interferon response impairs differentiation potential of pluripotent stem cells [J].
Eggenberger, Julie ;
Blanco-Melo, Daniel ;
Panis, Maryline ;
Brennand, Kristen J. ;
tenOever, Benjamin R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (04) :1384-1393