The expression of RBPJ and its potential role in rheumatoid arthritis

被引:0
作者
Chen, Shuaishuai [1 ,2 ]
Zhao, Weibo [3 ]
Du, Juping [1 ,2 ]
Chen, Suyun [1 ,2 ]
Li, Jun [1 ,2 ]
Shen, Bo [1 ,2 ]
Zhou, Yuanlin [4 ]
Chen, Shiyong [1 ,2 ]
机构
[1] Wenzhou Med Univ, Taizhou Hosp Zhejiang Prov, Dept Clin Lab, 150 Ximen St Linhai City, Linhai 317000, Peoples R China
[2] Key Lab Syst Med & Precis Diag & Treatment Taizhou, Luqiao, Peoples R China
[3] Wenzhou Med Univ, Taizhou Hosp Zhejiang Prov, Dept Orthoped, Linhai, Peoples R China
[4] Wenzhou Med Univ, Taizhou Hosp Zhejiang Prov, Dept Neurol, 150 Ximen St Linhai City, Linhai 317000, Peoples R China
来源
BMC GENOMICS | 2024年 / 25卷 / 01期
关键词
Rheumatoid arthritis; DAS28; score; RBPJ; Gene expression Omnibus; T cell differentiation; NOTCH; INNATE;
D O I
10.1186/s12864-024-10804-2
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
BackgroundRecombination signal-binding protein for immunoglobulin kappa J region (RBPJ) is a transcriptional regulator that plays an important role in maintaining immune homeostasis. This study aimed to estimate the expression of RBPJ in rheumatoid arthritis (RA) patients and investigate its relationship with RA.MethodsA total of 83 newly diagnosed RA patients and 70 healthy controls were included. mRNA was extracted from peripheral blood mononuclear cells (PBMCs), and the expression of RBPJ was detected using quantitative real-time PCR (qRT-PCR). An RA dataset (GSE89408) was obtained from the Gene Expression Omnibus (GEO) database, and RA synovial tissues were divided into two groups. The differentially expressed genes (DEGs) were selected with the "DESeq2" R package.ResultsRBPJ expression was lower in RA patients than in health controls and was negatively correlated with the DAS28 score, C-reactive protein (CRP) level and erythrocyte sedimentation rate (ESR). RA synovial tissues from GSE89408 were classified into RBPJ-low (<= 25%) and RBPJ-high (>= 75%) groups according to RBPJ expression, and 562 DEGs were identified. Gene Ontology (GO) enrichment analyses revealed that the DEGs significantly affected the regulation of T cell activation and lymphocyte/mononuclear cell differentiation. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed that the most enriched pathways of DEGs were the T cell receptor signaling pathway, Th1/2 and Th17 cell differentiation, the PI3K - Akt signaling pathway and cytokine-cytokine receptor interaction. CytoHubba Plugin revealed that most of the top 10 genes were involved in osteoclast differentiation, the T cell receptor signaling pathway and cytokine-cytokine receptor interaction.ConclusionsRBPJ expression was significantly lower in RA patients and negatively correlated with disease activity. GEO dataset analysis demonstrated that RBPJ may be involved in osteoclast differentiation, T cell activation and differentiation, and the T cell receptor signaling pathway. Our research may contribute to understanding the potential mechanisms by which RBPJ regulates T cell differentiation and cytokine-cytokine receptor interaction in RA patients.
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页数:14
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