Multi-omics reveals lactylation-driven regulatory mechanisms promoting tumor progression in oral squamous cell carcinoma

被引:12
作者
Jing, Fengyang [1 ,3 ]
Zhu, Lijing [1 ,3 ]
Zhang, Jianyun [1 ,3 ]
Zhou, Xuan [1 ,3 ]
Bai, Jiaying [1 ]
Li, Xuefen [2 ]
Zhang, Heyu [2 ,3 ]
Li, Tiejun [1 ,3 ]
机构
[1] Peking Univ, Sch & Hosp Stomatol, Natl Ctr Stomatol, Natl Clin Res Ctr Oral Dis,Minist Hlth,Dept Oral P, Beijing 100081, Peoples R China
[2] Peking Univ, Sch & Hosp Stomatol, Cent Lab, Beijing 100081, Peoples R China
[3] Chinese Acad Med Sci 2019RU034, Res Unit Precis Pathol Diag Tumors Oral & Maxillof, Beijing 100081, Peoples R China
关键词
Oral squamous cell carcinoma; Lactylation; Multi-omics analysis; Oncogenes; CANCER; HALLMARKS; INSTABILITY; METABOLISM; EXPRESSION; PROTEINS; PATHWAY; YAP/TAZ; STRESS; DNA;
D O I
10.1186/s13059-024-03383-8
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
BackgroundLactylation, a post-translational modification, is increasingly recognized for its role in cancer progression. This study investigates its prevalence and impact in oral squamous cell carcinoma (OSCC).ResultsImmunohistochemical staining of 81 OSCC cases shows lactylation levels correlate with malignancy grading. Proteomic analyses of six OSCC tissue pairs reveal 2765 lactylation sites on 1033 proteins, highlighting its extensive presence. These modifications influence metabolic processes, molecular synthesis, and transport. CAL27 cells are subjected to cleavage under targets and tagmentation assay for accessible-chromatin with high-throughput sequencing, and transcriptomic sequencing pre- and post-lactate treatment, with 217 genes upregulated due to lactylation. Chromatin immunoprecipitation-quantitative PCR and real-time fluorescence quantitative PCR confirm the regulatory role of lactylation at the K146 site of dexh-box helicase 9 (DHX9), a key factor in OSCC progression. CCK8, colony formation, scratch healing, and Transwell assays demonstrate that lactylation mitigates the inhibitory effect of DHX9 on OSCC, thereby promoting its occurrence and development.ConclusionsLactylation actively modulates gene expression in OSCC, with significant effects on chromatin structure and cellular processes. This study provides a foundation for developing targeted therapies against OSCC, leveraging the role of lactylation in disease pathogenesis.
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页数:21
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共 70 条
[1]   Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1 [J].
Barbie, David A. ;
Tamayo, Pablo ;
Boehm, Jesse S. ;
Kim, So Young ;
Moody, Susan E. ;
Dunn, Ian F. ;
Schinzel, Anna C. ;
Sandy, Peter ;
Meylan, Etienne ;
Scholl, Claudia ;
Froehling, Stefan ;
Chan, Edmond M. ;
Sos, Martin L. ;
Michel, Kathrin ;
Mermel, Craig ;
Silver, Serena J. ;
Weir, Barbara A. ;
Reiling, Jan H. ;
Sheng, Qing ;
Gupta, Piyush B. ;
Wadlow, Raymond C. ;
Le, Hanh ;
Hoersch, Sebastian ;
Wittner, Ben S. ;
Ramaswamy, Sridhar ;
Livingston, David M. ;
Sabatini, David M. ;
Meyerson, Matthew ;
Thomas, Roman K. ;
Lander, Eric S. ;
Mesirov, Jill P. ;
Root, David E. ;
Gilliland, D. Gary ;
Jacks, Tyler ;
Hahn, William C. .
NATURE, 2009, 462 (7269) :108-U122
[2]  
Buenrostro JD, 2013, NAT METHODS, V10, P1213, DOI [10.1038/NMETH.2688, 10.1038/nmeth.2688]
[3]   Translational genomics and recent advances in oral squamous cell carcinoma [J].
Chai, Annie Wai Yeeng ;
Lim, Kue Peng ;
Cheong, Sok Ching .
SEMINARS IN CANCER BIOLOGY, 2020, 61 :71-83
[4]   DHX9-dependent recruitment of BRCA1 to RNA promotes DNA end resection in homologous recombination [J].
Chakraborty, Prasun ;
Hiom, Kevin .
NATURE COMMUNICATIONS, 2021, 12 (01)
[5]   DHX9 helicase promotes R-loop formation in cells with impaired RNA splicing [J].
Chakraborty, Prasun ;
Huang, Jeffrey T. J. ;
Hiom, Kevin .
NATURE COMMUNICATIONS, 2018, 9
[6]   The DNA/RNA helicase DHX9 orchestrates the KDM2B-mediated transcriptional regulation of YAP1 in Ewing sarcoma [J].
Chellini, Lidia ;
Scarfo, Marzia ;
Bonvissuto, Davide ;
Sette, Claudio ;
Paronetto, Maria Paola .
ONCOGENE, 2024, 43 (04) :225-234
[7]   Advances in Hypoxia-Inducible Factor Biology [J].
Choudhry, Hani ;
Harris, Adrian L. .
CELL METABOLISM, 2018, 27 (02) :281-298
[8]   Sentinel Lymph Node Biopsy Accurately Stages the Regional Lymph Nodes for T1-T2 Oral Squamous Cell Carcinomas: Results of a Prospective Multi-Institutional Trial [J].
Civantos, Francisco J. ;
Zitsch, Robert P. ;
Schuller, David E. ;
Agrawal, Amit ;
Smith, Russell B. ;
Nason, Richard ;
Petruzelli, Guy ;
Gourin, Christine G. ;
Wong, Richard J. ;
Ferris, Robert L. ;
El Naggar, Adel ;
Ridge, John A. ;
Paniello, Randal C. ;
Owzar, Kouros ;
McCall, Linda ;
Chepeha, Douglas B. ;
Yarbrough, Wendell G. ;
Myers, Jeffrey N. .
JOURNAL OF CLINICAL ONCOLOGY, 2010, 28 (08) :1395-1400
[9]   The Hippo pathway in cancer: YAP/TAZ and TEAD as therapeutic targets in cancer [J].
Cunningham, Richard ;
Hansen, Carsten Gram .
CLINICAL SCIENCE, 2022, 136 (03) :197-222
[10]   Lactate promotes endothelial-to-mesenchymal transition via Snail1 lactylation after myocardial infarction [J].
Fan, Min ;
Yang, Kun ;
Wang, Xiaohui ;
Chen, Linjian ;
Gill, P. Spencer ;
Ha, Tuanzhu ;
Liu, Li ;
Lewis, Nicole H. ;
Williams, David L. ;
Li, Chuanfu .
SCIENCE ADVANCES, 2023, 9 (05)