Machine learning analysis of gene expression profiles of pyroptosis-related differentially expressed genes in ischemic stroke revealed potential targets for drug repurposing

被引:2
作者
Hei, Changchun [1 ]
Li, Xiaowen [1 ]
Wang, Ruochen [2 ]
Peng, Jiahui [2 ]
Liu, Ping [3 ]
Dong, Xialan [4 ]
Li, P. Andy [4 ]
Zheng, Weifan [4 ]
Niu, Jianguo [1 ]
Yang, Xiao [2 ]
机构
[1] Ningxia Med Univ, Dept Human Anat Histol & Embryol, Key Lab Craniocerebral Dis Ningxia Hui Autonomous, Yinchuan, Peoples R China
[2] Ningxia Med Univ, Gen Hosp, Dept Neurol, Yinchuan, Peoples R China
[3] Ningxia Med Univ, Gen Hosp, Dept Endocrinol, Yinchuan, Peoples R China
[4] North Carolina Cent Univ, Biomfg Res Inst Technol Enterprise BRITE, Coll Hlth & Sci, Dept Pharmaceut Sci, Durham, NC USA
基金
中国国家自然科学基金;
关键词
Ischemic stroke; Pyroptosis; Differentially expressed genes; Machine learning; Drug repurposing; SERINE PROTEASES; BRAIN-INJURY; VIMENTIN; MECHANISMS; APOPTOSIS; DATABASE; MODULATION; INHIBITORS; NETWORKS; PATIENT;
D O I
10.1038/s41598-024-83555-5
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The relationship between ischemic stroke (IS) and pyroptosis centers on the inflammatory response elicited by cerebral tissue damage during an ischemic stroke event. However, an in-depth mechanistic understanding of their connection remains limited. This study aims to comprehensively analyze the gene expression patterns of pyroptosis-related differentially expressed genes (PRDEGs) by employing integrated IS datasets and machine learning techniques. The primary objective was to develop classification models to identify crucial PRDEGs integral to the ischemic stroke process. Leveraging three distinct machine learning algorithms (LASSO, Random Forest, and Support Vector Machine), models were developed to differentiate between the Control and the IS patient samples. Through this approach, a core set of 10 PRDEGs consistently emerged as significant across all three machine learning models. Subsequent analysis of these genes yielded significant insights into their functional relevance and potential therapeutic approaches. In conclusion, this investigation underscores the pivotal role of pyroptosis pathways in ischemic stroke and identifies pertinent targets for therapeutic development and drug repurposing.
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页数:28
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