Genes to therapy: a comprehensive literature review of whole-exome sequencing in neurology and neurosurgery

被引:0
作者
Tan, Joecelyn Kirani [1 ]
Awuah, Wireko Andrew [2 ]
Ahluwalia, Arjun [3 ]
Sanker, Vivek [4 ]
Ben-Jaafar, Adam [5 ]
Tenkorang, Pearl Ohenewaa [6 ]
Aderinto, Nicholas [7 ]
Mehta, Aashna [8 ]
Darko, Kwadwo [9 ]
Shah, Muhammad Hamza [3 ]
Roy, Sakshi [3 ]
Abdul-Rahman, Toufik [2 ]
Atallah, Oday [10 ]
机构
[1] Univ Manchester, Fac Biol Med & Hlth, Manchester, England
[2] Sumy State Univ, Fac Med, UA-40007 Sumy, Ukraine
[3] Queens Univ Belfast, Sch Med, Belfast, North Ireland
[4] Trivandrum Med Coll, Dept Neurosurg, Thiruvananthapuram, India
[5] Univ Coll Dublin, Sch Med, Dublin, Ireland
[6] Univ Ghana, Med Sch, Accra, Ghana
[7] LAUTECH Teaching Hosp, Internal Med Dept, Ogbomosho, Nigeria
[8] Univ Debrecen, Fac Med, Debrecen, Hungary
[9] Korle Bu Teaching Hosp, Dept Neurosurg, Accra, Ghana
[10] Hannover Med Sch, Dept Neurosurg, Carl Neuberg Str 1, D-30625 Hannover, Germany
关键词
Whole-Exome sequencing; Neurogenetics; Clinical genomics; Neurological disorders; Neurosurgery; CLINICAL UTILITY; ISCHEMIC-STROKE; RARE; VARIANTS; GENOMICS; MUTATION; CHILDREN; PATIENT; CANCER; OPPORTUNITIES;
D O I
10.1186/s40001-024-02063-4
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Whole-exome sequencing (WES), a ground-breaking technology, has emerged as a linchpin in neurology and neurosurgery, offering a comprehensive elucidation of the genetic landscape of various neurological disorders. This transformative methodology concentrates on the exonic portions of DNA, which constitute approximately 1% of the human genome, thus facilitating an expedited and efficient sequencing process. WES has been instrumental in advancing our understanding of neurodegenerative diseases, neuro-oncology, cerebrovascular disorders, and epilepsy by revealing rare variants and novel mutations and providing intricate insights into their genetic complexities. This has been achieved while maintaining a substantial diagnostic yield, thereby offering novel perspectives on the pathophysiology and personalized management of these conditions. The utilization of WES boasts several advantages over alternative genetic sequencing methodologies, including cost-effectiveness, reduced incidental findings, simplified analysis and interpretation process, and reduced computational demands. However, despite its benefits, there are challenges, such as the interpretation of variants of unknown significance, cost considerations, and limited accessibility in resource-constrained settings. Additionally, ethical, legal, and social concerns are raised, particularly in the context of incidental findings and patient consent. As we look to the future, the integration of WES with other omics-based approaches could help revolutionize the field of personalized medicine through its implications in predictive models and the development of targeted therapeutic strategies, marking a significant stride toward more effective and clinically oriented solutions.
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页数:26
相关论文
共 137 条
[1]   Signatures of mutational processes in human cancer [J].
Alexandrov, Ludmil B. ;
Nik-Zainal, Serena ;
Wedge, David C. ;
Aparicio, Samuel A. J. R. ;
Behjati, Sam ;
Biankin, Andrew V. ;
Bignell, Graham R. ;
Bolli, Niccolo ;
Borg, Ake ;
Borresen-Dale, Anne-Lise ;
Boyault, Sandrine ;
Burkhardt, Birgit ;
Butler, Adam P. ;
Caldas, Carlos ;
Davies, Helen R. ;
Desmedt, Christine ;
Eils, Roland ;
Eyfjord, Jorunn Erla ;
Foekens, John A. ;
Greaves, Mel ;
Hosoda, Fumie ;
Hutter, Barbara ;
Ilicic, Tomislav ;
Imbeaud, Sandrine ;
Imielinsk, Marcin ;
Jaeger, Natalie ;
Jones, David T. W. ;
Jones, David ;
Knappskog, Stian ;
Kool, Marcel ;
Lakhani, Sunil R. ;
Lopez-Otin, Carlos ;
Martin, Sancha ;
Munshi, Nikhil C. ;
Nakamura, Hiromi ;
Northcott, Paul A. ;
Pajic, Marina ;
Papaemmanuil, Elli ;
Paradiso, Angelo ;
Pearson, John V. ;
Puente, Xose S. ;
Raine, Keiran ;
Ramakrishna, Manasa ;
Richardson, Andrea L. ;
Richter, Julia ;
Rosenstiel, Philip ;
Schlesner, Matthias ;
Schumacher, Ton N. ;
Span, Paul N. ;
Teague, Jon W. .
NATURE, 2013, 500 (7463) :415-+
[2]   A systematic comparison of two new releases of exome sequencing products: the aim of use determines the choice of product [J].
Altmueller, Janine ;
Motameny, Susanne ;
Becker, Christian ;
Thiele, Holger ;
Chatterjee, Sreyoshi ;
Wollnik, Bernd ;
Nuernberg, Peter .
BIOLOGICAL CHEMISTRY, 2016, 397 (08) :791-801
[3]  
Asan Y., 2011, GENOME BIOL, V12, pR95, DOI [10.1186/gb-2011-12-9-r95, DOI 10.1186/gb-2011-12-9-r95]
[4]   Rare and Coding Region Genetic Variants Associated With Risk of Ischemic Stroke The NHLBI Exome Sequence Project [J].
Auer, Paul L. ;
Nalls, Mike ;
Meschia, James F. ;
Worrall, Bradford B. ;
Longstreth, W. T., Jr. ;
Seshadri, Sudha ;
Kooperberg, Charles ;
Burger, Kathleen M. ;
Carlson, Christopher S. ;
Carty, Cara L. ;
Chen, Wei-Min ;
Cupples, L. Adrienne ;
DeStefano, Anita L. ;
Fornage, Myriam ;
Hardy, John ;
Hsu, Li ;
Jackson, Rebecca D. ;
Jarvik, Gail P. ;
Kim, Daniel S. ;
Lakshminarayan, Kamakshi ;
Lange, Leslie A. ;
Manichaikul, Ani ;
Quinlan, Aaron R. ;
Singleton, Andrew B. ;
Thornton, Timothy A. ;
Nickerson, Deborah A. ;
Peters, Ulrike ;
Rich, Stephen S. .
JAMA NEUROLOGY, 2015, 72 (07) :781-788
[5]   Best practices for the interpretation and reporting of clinical whole genome sequencing [J].
Austin-Tse, Christina A. ;
Jobanputra, Vaidehi ;
Perry, Denise L. ;
Bick, David ;
Taft, Ryan J. ;
Venner, Eric ;
Gibbs, Richard A. ;
Young, Ted ;
Barnett, Sarah ;
Belmont, John W. ;
Boczek, Nicole ;
Chowdhury, Shimul ;
Ellsworth, Katarzyna A. ;
Guha, Saurav ;
Kulkarni, Shashikant ;
Marcou, Cherisse ;
Meng, Linyan ;
Murdock, David R. ;
Rehman, Atteeq U. ;
Spiteri, Elizabeth ;
Thomas-Wilson, Amanda ;
Kearney, Hutton M. ;
Rehm, Heidi L. .
NPJ GENOMIC MEDICINE, 2022, 7 (01)
[6]   Targeted next-generation sequencing by specific capture of multiple genomic loci using low-volume microfluidic DNA arrays [J].
Bau, Stephan ;
Schracke, Nadine ;
Kranzle, Marcel ;
Wu, Haiguo ;
Stahler, Peer F. ;
Hoheisel, Joerg D. ;
Beier, Markus ;
Summerer, Daniel .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2009, 393 (01) :171-175
[7]   Whole exome sequencing identifies the first STRADA point mutation in a patient with polyhydramnios, megalencephaly, and symptomatic epilepsy syndrome (PMSE) [J].
Bi, Weimin ;
Glass, Ian A. ;
Muzny, Donna M. ;
Gibbs, Richard A. ;
Eng, Christine M. ;
Yang, Yaping ;
Sun, Angela .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2016, 170 (08) :2181-2185
[8]   Whole exome and whole genome sequencing [J].
Bick, David ;
Dimmock, David .
CURRENT OPINION IN PEDIATRICS, 2011, 23 (06) :594-600
[9]  
Bodi K, 2013, J Biomol Tech, V24, P73, DOI 10.7171/jbt.13-2402-002
[10]   Novel WFS1 Variants in Two Moroccan Families with Wolfram Syndrome [J].
Bouhouche, Ahmed ;
Sefiani, Sara ;
Charoute, Hicham ;
Houyam, Tibar ;
Bouslam, Naima ;
El Yousfi, Fatima-Zahra ;
Bnouhana, Wadi ;
Benomar, Ali ;
Ouadghiri, Fatima-Zahra ;
Regragui, Wafaa .
GENETIC TESTING AND MOLECULAR BIOMARKERS, 2024, 28 (06) :257-262