Molecular characterization of a novel victorivirus isolated from Stagonosporopsis citrulli

被引:0
作者
Ma, Xiaofang [1 ]
Zhang, Xing [2 ]
Zhai, Lifeng [2 ]
Jiang, Yingchun [1 ]
Moffett, Peter [3 ]
Zhang, Yu [1 ]
Song, Fang [1 ]
Song, Xin [1 ]
Wang, Zhijing [1 ]
He, Ligang [1 ]
Ji, Shengmei [4 ]
Wu, Liming [1 ]
机构
[1] Hubei Acad Agr Sci, Res Inst Fruit & Tea, Hubei Key Lab Germplasm Innovat & Utilizat Fruit t, Wuhan 430064, Hubei, Peoples R China
[2] Yangtze Normal Univ, Coll Life Sci & Technol, Chongqing 408000, Peoples R China
[3] Univ Sherbrooke, Ctr SEVE, Dept Biol, 2500 Blvd Univ, Sherbrooke, PQ J1K 2R1, Canada
[4] Hubei Vocat Coll Biotechnol, Coll Hort & Forestry Sci, Wuhan 430070, Peoples R China
基金
中国国家自然科学基金;
关键词
SEQUENCE; VIRUS; PEAR;
D O I
10.1007/s00705-024-06185-2
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Members of the fungal genus Stagonosporopsis are important plant pathogens that can cause severe disease on a wide range of economically important plants and crops. Here, a novel victorivirus, tentatively named "Stagonosporopsis citrulli victorivirus 1" (SciVV1), was isolated from S. citrulli isolate HS2-8. The SciVV1 genome is 5,163 nucleotides in length, with a predicted GC content of 63.85%, and contains two open reading frames (ORF1 and ORF2), which overlap at an AUGA sequence. ORF1 and ORF2 are predicted to encode a coat protein (CP) and an RNA-dependent RNA polymerase (RdRp). A phylogenetic tree based on RdRp amino acid (aa) sequences showed that SciVV1 clustered together with members of the genus Victorivirus in the family Pseudototiviridae. Our results indicate that SciVV1 is a novel victorivirus. This is the first report of the complete genome sequence of SciVV1 infecting S. citrulli.
引用
收藏
页数:6
相关论文
共 20 条
[1]   Hybrids of RNA viruses and viroid-like elements replicate in fungi [J].
Forgia, Marco ;
Navarro, Beatriz ;
Daghino, Stefania ;
Cervera, Amelia ;
Gisel, Andreas ;
Perotto, Silvia ;
Aghayeva, Dilzara N. ;
Akinyuwa, Mary F. ;
Gobbi, Emanuela ;
Zheludev, Ivan N. ;
Edgar, Robert C. ;
Chikhi, Rayan ;
Turina, Massimo ;
Babaian, Artem ;
Di Serio, Francesco ;
de la Pena, Marcos .
NATURE COMMUNICATIONS, 2023, 14 (01)
[2]   50-plus years of fungal viruses [J].
Ghabrial, Said A. ;
Caston, Jose R. ;
Jiang, Daohong ;
Nibert, Max L. ;
Suzuki, Nobuhiro .
VIROLOGY, 2015, 479 :356-368
[3]   Refined families of Dothideomycetes: Dothideomycetidae and Pleosporomycetidae [J].
Hongsanan, S. ;
Hyde, K. D. ;
Phookamsak, R. ;
Wanasinghe, D. N. ;
McKenzie, E. H. C. ;
Sarma, V. V. ;
Boonmee, S. ;
Luecking, R. ;
Bhat, D. J. ;
Liu, N. G. ;
Tennakoon, D. S. ;
Pem, D. S. ;
Karunarathna, A. ;
Jiang, S. H. ;
Jones, E. B. G. ;
Phillips, A. J. L. ;
Manawasinghe, I. S. ;
Tibpromma, S. ;
Jayasiri, S. C. ;
Sandamali, D. S. ;
Jayawardena, R. S. ;
Wijayawardene, N. N. ;
Ekanayaka, A. H. ;
Jeewon, R. ;
Lu, Y. Z. ;
Dissanayake, A. J. ;
Zeng, X. Y. ;
Luo, Z. L. ;
Tian, Q. ;
Phukhamsakda, C. ;
Thambugala, K. M. ;
Dai, D. Q. ;
Chethana, K. W. T. ;
Samarakoon, M. C. ;
Ertz, D. ;
Bao, D. F. ;
Doilom, M. ;
Liu, J. K. ;
Perez-Ortega, S. ;
Suija, A. ;
Senwanna, C. ;
Wijesinghe, S. N. ;
Konta, S. ;
Niranjan, M. ;
Zhang, S. N. ;
Ariyawansa, H. A. ;
Jiang, H. B. ;
Zhang, J. F. ;
Norphanphoun, C. ;
de Silva, N., I .
MYCOSPHERE, 2020, 11 (01) :1553-2107
[4]   Novel Victorivirus from a Pakistani Isolate of Alternaria alternata Lacking a Typical Translational Stop/Restart Sequence Signature [J].
Jamal, Atif ;
Sato, Yukiyo ;
Shahi, Sabitree ;
Shamsi, Wajeeha ;
Kondo, Hideki ;
Suzuki, Nobuhiro .
VIRUSES-BASEL, 2019, 11 (06)
[5]   MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization [J].
Katoh, Kazutaka ;
Rozewicki, John ;
Yamada, Kazunori D. .
BRIEFINGS IN BIOINFORMATICS, 2019, 20 (04) :1160-1166
[6]   A novel victorivirus from the phytopathogenic fungus Neofusicoccum parvum [J].
Khan, Haris Ahmed ;
Sato, Yukiyo ;
Kondo, Hideki ;
Jamal, Atif ;
Bhatti, Muhammad Faraz ;
Suzuki, Nobuhiro .
ARCHIVES OF VIROLOGY, 2022, 167 (03) :923-929
[7]   The complete nucleotide sequence of a totivirus from Aspergillus foetidus [J].
Kozlakidis, Zisis ;
Herrero, Noemi ;
Coutts, Robert H. A. .
ARCHIVES OF VIROLOGY, 2013, 158 (01) :263-266
[8]   MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms [J].
Kumar, Sudhir ;
Stecher, Glen ;
Li, Michael ;
Knyaz, Christina ;
Tamura, Koichiro .
MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (06) :1547-1549
[9]   RNA Sequence Determinants of a Coupled Termination-Reinitiation Strategy for Downstream Open Reading Frame Translation in Helminthosporium victoriae Virus 190S and Other Victoriviruses (Family Totiviridae) [J].
Li, Hua ;
Havens, Wendy M. ;
Nibert, Max L. ;
Ghabrial, Said A. .
JOURNAL OF VIROLOGY, 2011, 85 (14) :7343-7352
[10]   Molecular characterization of a novel victorivirus isolated from Botryosphaeria dothidea, the causal agent of longan leaf spot disease [J].
Li, Jiali ;
Zhai, Lifeng ;
Zhang, Meixin ;
Luo, Gangjun ;
Wen, Yongqi ;
Cao, Tingting ;
Xia, Huan ;
Zhang, Jiayu ;
Liu, Ming .
ARCHIVES OF VIROLOGY, 2022, 167 (11) :2417-2422