Enzymatic Birch reduction via hydrogen atom transfer at [4Fe-4S]-OH2 and [8Fe-9S] clusters

被引:0
作者
Fuchs, Jonathan [1 ]
Fernandez-Arevalo, Unai [2 ]
Demmer, Ulrike [3 ]
Diaz, Eduardo [2 ]
Ullmann, G. Matthias [4 ]
Pierik, Antonio J. [5 ]
Ermler, Ulrich [3 ]
Boll, Matthias [1 ]
机构
[1] Univ Freiburg, Fac Biol Microbiol, D-79104 Freiburg, Germany
[2] Ctr Invest Biol Margarita Salas CSIC, Biotechnol Dept, Madrid 28040, Spain
[3] Max Planck Inst Biophys, Dept Mol Membrane Biol, D-60438 Frankfurt, Germany
[4] Univ Bayreuth, Fac Computat Biochem, D-95447 Bayreuth, Germany
[5] RPTU Kaiserslautern Landau, Dept Chem, D-67663 Kaiserslautern, Germany
关键词
BENZOYL-COENZYME; AROMATIC-COMPOUNDS; SILICA-GEL; KEY ENZYME; COA; DEGRADATION; METABOLISM; MECHANISM; DYNAMICS; PROGRAM;
D O I
10.1038/s41467-025-58418-w
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The alkali metal- and ammonia-dependent Birch reduction is the classical synthetic method for achieving dihydro additions to arenes, typically yielding 1,4-cyclodienes. A mild biological alternative to this process are 1,5-dienoyl-coenzyme A (CoA)-forming class I and II benzoyl-CoA reductases (BCRs), widely abundant key enzymes in the biodegradation of aromatic compounds at anoxic environments. To obtain a comprehensive mechanistic understanding of class I BCR catalysis, we produced the active site subunits from a denitrifying bacterium and determined the X-ray structure of its substrate and product complexes at 1.4 & Aring; revealing non-canonical double-cubane [8Fe-9S] and active site aqua-[4Fe-4S] clusters. Together with kinetic, spectroscopic and QM/MM studies, we provide evidence for a radical mechanism with a [4Fe-4S] cluster-bound water molecule acting as hydrogen atom and electron donor at potentials beyond the biological redox window. An analogous Birch-like radical mechanism is applied by class II BCRs with the catalytic water bound to a tungsten-bis-metallopterin cofactor. The use of activated, metal-bound water ligands as hydrogen atom donor serves as a basic blueprint for future enzymatic or biomimetic Birch reduction processes.
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页数:11
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