smCamera: all-in-one software package for single-molecule data acquisition and data analysis

被引:3
作者
Lee, Kyung Suk [1 ]
Ha, Taekjip [2 ,3 ,4 ]
机构
[1] Kongju Natl Univ, Dept Phys Educ, Kong Ju 32588, South Korea
[2] Boston Childrens Hosp, Program Cellular & Mol Med, Boston, MA 02115 USA
[3] Harvard Med Sch, Dept Pediat, Boston, MA 02115 USA
[4] Howard Hughes Med Inst, Boston, MA 02115 USA
基金
新加坡国家研究基金会;
关键词
Single-molecule FRET; Single-molecule microscopy; DYNAMICS;
D O I
10.1007/s40042-024-01243-z
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
In the last decades, biological applications of single-molecule methods have grown rapidly and researchers with expertise in microscopy and instrumentation have adopted these techniques and advanced them even further. However, practicing single-molecule methods is still challenging for most because of the need for expensive equipments and instrumentation demands as well as complicated data acquisition and analysis workflow consisting of multiple steps using different software in each of them. smCamera is an all-in-one software package which aims to alleviate steep learning curves of the data acquisition and analysis. From recording movies through extraction of time series of single-molecule fluorescence resonance energy transfer (smFRET), everything can be done in a single program without any additional software or programming languages. Although smCamera has not been published before, it has been distributed to facilitate adaption of smFRET experiments and there has been requests for support for this software. We hope that this work answers questions from researchers using smCamera and also provides an opportunity to introduce and distribute smCamera for new users.
引用
收藏
页码:1 / 13
页数:13
相关论文
共 18 条
[1]  
Andor, 2024, IXON EMCCD CAMERAS M
[2]   Construction of a Three-Color Prism-Based TIRF Microscope to Study the Interactions and Dynamics of Macromolecules [J].
Fairlamb, Max S. ;
Whitaker, Amy M. ;
Bain, Fletcher E. ;
Spies, Maria ;
Freudenthal, Bret D. .
BIOLOGY-BASEL, 2021, 10 (07)
[3]   Single-Molecule Analysis of the Improved Variants of the G-Quadruplex Recognition Protein G4P [J].
Gaur, Paras ;
Bain, Fletcher E. ;
Honda, Masayoshi ;
Granger, Sophie L. ;
Spies, Maria .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (12)
[4]   Ligand-induced conformational changes observed in single RNA molecules [J].
Ha, T ;
Zhuang, XW ;
Kim, HD ;
Orr, JW ;
Williamson, JR ;
Chu, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (16) :9077-9082
[5]   Single-molecule fluorescence resonance energy transfer [J].
Ha, T .
METHODS, 2001, 25 (01) :78-86
[6]   Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study [J].
Hellenkamp, Bjoern ;
Schmid, Sonja ;
Doroshenko, Olga ;
Opanasyuk, Oleg ;
Kuehnemuth, Ralf ;
Adariani, Soheila Rezaei ;
Ambrose, Benjamin ;
Aznauryan, Mikayel ;
Barth, Anders ;
Birkedal, Victoria ;
Bowen, Mark E. ;
Chen, Hongtao ;
Cordes, Thorben ;
Eilert, Tobias ;
Fijen, Carel ;
Gebhardt, Christian ;
Goetz, Markus ;
Gouridis, Giorgos ;
Gratton, Enrico ;
Ha, Taekjip ;
Hao, Pengyu ;
Hanke, Christian A. ;
Hartmann, Andreas ;
Hendrix, Jelle ;
Hildebrandt, Lasse L. ;
Hirschfeld, Verena ;
Hohlbein, Johannes ;
Hua, Boyang ;
Huebner, Christian G. ;
Kallis, Eleni ;
Kapanidis, Achillefs N. ;
Kim, Jae-Yeol ;
Krainer, Georg ;
Lamb, Don C. ;
Lee, Nam Ki ;
Lemke, Edward A. ;
Levesque, Brie ;
Levitus, Marcia ;
McCann, James J. ;
Naredi-Rainer, Nikolaus ;
Nettels, Daniel ;
Thuy Ngo ;
Qiu, Ruoyi ;
Robb, Nicole C. ;
Roecker, Carlheinz ;
Sanabria, Hugo ;
Schlierf, Michael ;
Schroeder, Tim ;
Schuler, Benjamin ;
Seidel, Henning .
NATURE METHODS, 2018, 15 (09) :669-+
[7]   Single-Molecule Analysis Reveals Differential Effect of ssDNA-Binding Proteins on DNA Translocation by XPD Helicase [J].
Honda, Masayoshi ;
Park, Jeehae ;
Pugh, Robert A. ;
Ha, Taekjip ;
Spies, Maria .
MOLECULAR CELL, 2009, 35 (05) :694-703
[8]  
Joo C., 2008, Single-molecule techniques : a laboratory manual, P3
[9]  
Juette MF, 2016, NAT METHODS, V13, P341, DOI [10.1038/NMETH.3769, 10.1038/nmeth.3769]
[10]   Generation of site-specifically labelled fluorescent human XPA to investigate DNA binding dynamics during nucleotide excision repair [J].
Kuppa, Sahiti ;
Corless, Elliot ;
Caldwell, Colleen C. ;
Spies, Maria ;
Antony, Edwin .
METHODS, 2024, 224 :47-53