Accurate and timely mapping of different crop types holds significant importance for food security and crop management at regional and global levels. This letter proposes a novel 3-D-crop type mapping (CTM) model based on an unsupervised crop-type mapping technique using satellite image time series (SITS) data and a 3-D convolutional autoencoder (CAE). The study uses a combination of five different vegetation indices: Normalized Difference Vegetation Index (NDVI), Red-Edge Chlorophyll Vegetation Index (RECl), Normalized Difference Red Edge Vegetation Index (NDRE), Green Normalized Difference Vegetation Index (GNDVI), and Visible Atmospherically Resistant Index (VARI) of time series data, along with a 3D-CAE for feature extraction. The model underwent evaluation employing one publicly accessible dataset and one in-house dataset sourced from the PlanetScope instruments. In the case of the in-house dataset, the model has achieved an accuracy of 88.75%, 73.88%, and 93.97% for maize, paddy, and sugarcane, respectively. In the case of the publicly available dataset, the model has achieved an accuracy of 83.71%, 72.81%, and 75.37% for paddy, triticale, and barley, respectively. Our 3D-CTM model demonstrates higher accuracy in mapping the crop types, which can be further utilized for effective management of the agricultural sectors.