Current Status and Applications of Genome-Scale Metabolic Models of Oleaginous Microorganisms

被引:0
作者
Hu, Zijian [1 ]
Qian, Jinyi [1 ]
Wang, Yuzhou [1 ]
Ye, Chao [1 ,2 ]
机构
[1] Nanjing Normal Univ, Sch Food Sci & Pharmaceut Engn, Nanjing, Peoples R China
[2] Nanjing Normal Univ, Minist Educ, Key Lab NSLSCS, Nanjing, Peoples R China
来源
FOOD BIOENGINEERING | 2024年 / 3卷 / 04期
基金
中国国家自然科学基金;
关键词
cell phenotype; genome-scale metabolic network model; lipid production; metabolic engineering; oleaginous microorganisms; FLUX BALANCE ANALYSIS; LIPID-ACCUMULATION; HETEROTROPHIC GROWTH; CARBON METABOLISM; NETWORK; RECONSTRUCTION; YEAST; VALIDATION; PREDICTION; RESOURCE;
D O I
10.1002/fbe2.12113
中图分类号
TS2 [食品工业];
学科分类号
0832 ;
摘要
Oleaginous microorganisms have the unique ability to accumulate lipids that can exceed 20% of their dry cell weight under certain conditions. Despite their potential for efficient lipid production, the metabolic pathways involved are not yet fully understood, largely due to the complexity of intracellular processes and the challenges in phenotypic prediction. This review synthesizes the latest research on the application of Genome-scale Metabolic Network Models (GSMMs) to study oleaginous microorganisms, including bacteria, cyanobacteria, yeast, microalgae, and fungi, and provides a comprehensive analysis of how GSMMs have been utilized to decipher the metabolic mechanisms behind lipid accumulation and to identify key genes involved in lipid synthesis. The review highlights the role of GSMMs in predicting cellular behavior, optimizing metabolic engineering strategies, and discusses the future directions and potential of GSMMs in enhancing lipid production in microorganisms. This comprehensive overview not only summarizes the current state of research but also identifies gaps and opportunities for further investigation in the field.
引用
收藏
页码:492 / 511
页数:20
相关论文
共 134 条
[11]   Metabolic flux analysis of heterotrophic growth in Chlamydomonas reinhardtii [J].
Boyle, Nanette R. ;
Sengupta, Neelanjan ;
Morgan, John A. .
PLOS ONE, 2017, 12 (05)
[12]   Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii [J].
Boyle, Nanette R. ;
Morgan, John A. .
BMC SYSTEMS BIOLOGY, 2009, 3
[13]   Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis [J].
Broddrick, Jared T. ;
Rubin, Benjamin E. ;
Welkie, David G. ;
Du, Niu ;
Mih, Nathan ;
Diamond, Spencer ;
Lee, Jenny J. ;
Golden, Susan S. ;
Palsson, Bernhard O. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (51) :E8344-E8353
[14]   A quantitative study of eicosapentaenoic acid (EPA) production by Nannochloropsis gaditana for aquaculture as a function of dilution rate, temperature and average irradiance [J].
Camacho-Rodriguez, J. ;
Gonzalez-Cespedes, A. M. ;
Ceron-Garcia, M. C. ;
Fernandez-Sevilla, J. M. ;
Acien-Fernandez, F. G. ;
Molina-Grima, E. .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2014, 98 (06) :2429-2440
[15]  
Chaiboonchoe Amphun, 2014, Front Bioeng Biotechnol, V2, P68, DOI 10.3389/fbioe.2014.00068
[16]   Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism [J].
Chang, Roger L. ;
Ghamsari, Lila ;
Manichaikul, Ani ;
Hom, Erik F. Y. ;
Balaji, Santhanam ;
Fu, Weiqi ;
Shen, Yun ;
Hao, Tong ;
Palsson, Bernhard O. ;
Salehi-Ashtiani, Kourosh ;
Papin, Jason A. .
MOLECULAR SYSTEMS BIOLOGY, 2011, 7
[17]   Genome-scale modeling of yeast metabolism: retrospectives and perspectives [J].
Chen, Yu ;
Li, Feiran ;
Nielsen, Jens .
FEMS YEAST RESEARCH, 2022, 22 (01)
[18]   Using Gene Essentiality and Synthetic Lethality Information to Correct Yeast and CHO Cell Genome-Scale Models [J].
Chowdhury, Ratul ;
Chowdhury, Anupam ;
Maranas, Costas D. .
METABOLITES, 2015, 5 (04) :536-570
[19]  
Christian N, 2009, MOL BIOSYST, V5, P1889, DOI [10.1039/b915913b, 10.1039/B915913b]
[20]   A Model-Based Method for Investigating Bioenergetic Processes in Autotrophically Growing Eukaryotic Microalgae: Application to the Green Algae Chlamydomonas reinhardtii [J].
Cogne, Guillaume ;
Ruegen, Marco ;
Bockmayr, Alexander ;
Titica, Mariana ;
Dussap, Claude-Gilles ;
Cornet, Jean-Francois ;
Legrand, Jack .
BIOTECHNOLOGY PROGRESS, 2011, 27 (03) :631-640