Current Status and Applications of Genome-Scale Metabolic Models of Oleaginous Microorganisms

被引:0
作者
Hu, Zijian [1 ]
Qian, Jinyi [1 ]
Wang, Yuzhou [1 ]
Ye, Chao [1 ,2 ]
机构
[1] Nanjing Normal Univ, Sch Food Sci & Pharmaceut Engn, Nanjing, Peoples R China
[2] Nanjing Normal Univ, Minist Educ, Key Lab NSLSCS, Nanjing, Peoples R China
来源
FOOD BIOENGINEERING | 2024年 / 3卷 / 04期
基金
中国国家自然科学基金;
关键词
cell phenotype; genome-scale metabolic network model; lipid production; metabolic engineering; oleaginous microorganisms; FLUX BALANCE ANALYSIS; LIPID-ACCUMULATION; HETEROTROPHIC GROWTH; CARBON METABOLISM; NETWORK; RECONSTRUCTION; YEAST; VALIDATION; PREDICTION; RESOURCE;
D O I
10.1002/fbe2.12113
中图分类号
TS2 [食品工业];
学科分类号
0832 ;
摘要
Oleaginous microorganisms have the unique ability to accumulate lipids that can exceed 20% of their dry cell weight under certain conditions. Despite their potential for efficient lipid production, the metabolic pathways involved are not yet fully understood, largely due to the complexity of intracellular processes and the challenges in phenotypic prediction. This review synthesizes the latest research on the application of Genome-scale Metabolic Network Models (GSMMs) to study oleaginous microorganisms, including bacteria, cyanobacteria, yeast, microalgae, and fungi, and provides a comprehensive analysis of how GSMMs have been utilized to decipher the metabolic mechanisms behind lipid accumulation and to identify key genes involved in lipid synthesis. The review highlights the role of GSMMs in predicting cellular behavior, optimizing metabolic engineering strategies, and discusses the future directions and potential of GSMMs in enhancing lipid production in microorganisms. This comprehensive overview not only summarizes the current state of research but also identifies gaps and opportunities for further investigation in the field.
引用
收藏
页码:492 / 511
页数:20
相关论文
共 134 条
  • [1] Abraham T.W., 2012, Polymer Science: A Comprehensive Reference, P15, DOI DOI 10.1016/B978-0-444-53349-4.00253-3
  • [2] Oily yeasts as oleaginous cell factories
    Ageitos, Jose Manuel
    Vallejo, Juan Andres
    Veiga-Crespo, Patricia
    Villa, Tomas G.
    [J]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2011, 90 (04) : 1219 - 1227
  • [3] Sustainable Diesel Feedstock: a Comparison of Oleaginous Bacterial and Microalgal Model Systems
    Archanaa, S.
    Jose, Steffi
    Mukherjee, Amitava
    Suraishkumar, G. K.
    [J]. BIOENERGY RESEARCH, 2019, 12 (01) : 205 - 216
  • [4] The genome of the diatom Thalassiosira pseudonana:: Ecology, evolution, and metabolism
    Armbrust, EV
    Berges, JA
    Bowler, C
    Green, BR
    Martinez, D
    Putnam, NH
    Zhou, SG
    Allen, AE
    Apt, KE
    Bechner, M
    Brzezinski, MA
    Chaal, BK
    Chiovitti, A
    Davis, AK
    Demarest, MS
    Detter, JC
    Glavina, T
    Goodstein, D
    Hadi, MZ
    Hellsten, U
    Hildebrand, M
    Jenkins, BD
    Jurka, J
    Kapitonov, VV
    Kröger, N
    Lau, WWY
    Lane, TW
    Larimer, FW
    Lippmeier, JC
    Lucas, S
    Medina, M
    Montsant, A
    Obornik, M
    Parker, MS
    Palenik, B
    Pazour, GJ
    Richardson, PM
    Rynearson, TA
    Saito, MA
    Schwartz, DC
    Thamatrakoln, K
    Valentin, K
    Vardi, A
    Wilkerson, FP
    Rokhsar, DS
    [J]. SCIENCE, 2004, 306 (5693) : 79 - 86
  • [5] Aung Hnin W, 2013, Ind Biotechnol (New Rochelle N Y), V9, P215
  • [6] Metabolic traits specific for lipid-overproducing strain of Mucor circinelloides WJ11 identified by genome-scale modeling approach
    Ayudhya, Nattapat Isarankura Na
    Laoteng, Kobkul
    Song, Yuanda
    Meechai, Asawin
    Vongsangnak, Wanwipa
    [J]. PEERJ, 2019, 7
  • [7] In silico design of anaerobic growth-coupled product formation in Escherichia coli: experimental validation using a simple polyol, glycerol
    Balagurunathan, Balaji
    Jain, Vishist Kumar
    Tear, Crystal Jing Ying
    Lim, Chan Yuen
    Zhao, Hua
    [J]. BIOPROCESS AND BIOSYSTEMS ENGINEERING, 2017, 40 (03) : 361 - 372
  • [8] Baroukh C, 2013, PLOS ONE, V12, P107, DOI [10.3182/20131216-3-IN-2044.00006, DOI 10.3182/20131216-3-IN-2044.00006]
  • [9] An overview of lipid metabolism in yeasts and its impact on biotechnological processes
    Beopoulos, Athanasios
    Nicaud, Jean-Marc
    Gaillardin, Claude
    [J]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2011, 90 (04) : 1193 - 1206
  • [10] Metabolic network analysis and experimental study of lipid production in Rhodosporidium toruloides grown on single and mixed substrates
    Bommareddy, Rajesh Reddy
    Sabra, Wael
    Maheshwari, Garima
    Zeng, An-Ping
    [J]. MICROBIAL CELL FACTORIES, 2015, 14