Free Energy Analysis of Protein-DNA Binding: The EcoRI Endonuclease-DNA Complex

被引:0
|
作者
Dept. Chem. Prog. in Molec. Biophys., Wesleyan University, Middletown, CT 06459, United States [1 ]
不详 [2 ]
机构
来源
J. Comput. Phys. | / 1卷 / 333-357期
关键词
Number:; GM-08271; GM-37909; Acronym:; NIH; Sponsor: National Institutes of Health; -; CSIR; Sponsor: Council of Scientific and Industrial Research; India; IFCPAR; Sponsor: Indo-French Centre for the Promotion of Advanced Research;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Free energy analysis of protein-DNA binding: The EcoRI endonuclease-DNA complex
    Jayaram, B
    McConnell, KJ
    Dixit, SB
    Beveridge, DL
    JOURNAL OF COMPUTATIONAL PHYSICS, 1999, 151 (01) : 333 - 357
  • [2] PRELIMINARY-X-RAY DIFFRACTION STUDIES OF ECORI RESTRICTION ENDONUCLEASE-DNA COMPLEX
    YOUNG, TS
    KIM, SH
    MODRICH, P
    BETH, A
    JAY, E
    JOURNAL OF MOLECULAR BIOLOGY, 1981, 145 (03) : 607 - 610
  • [3] ULTRAVIOLET FOOTPRINTING ACCURATELY MAPS SEQUENCE-SPECIFIC CONTACTS AND DNA KINKING IN THE ECORI ENDONUCLEASE-DNA COMPLEX
    BECKER, MM
    LESSER, D
    KURPIEWSKI, M
    BARANGER, A
    JENJACOBSON, L
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (17) : 6247 - 6251
  • [4] Crystallization and preliminary diffraction analysis of the HincII restriction endonuclease-DNA complex
    Horton, NC
    Dorner, LF
    Schildkraut, I
    Perona, JJ
    ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1999, 55 : 1943 - 1945
  • [5] KINKED DNA IN CRYSTALLINE COMPLEX WITH ECORI ENDONUCLEASE
    FREDERICK, CA
    GRABLE, J
    MELIA, M
    SAMUDZI, C
    JENJACOBSON, L
    WANG, BC
    GREENE, P
    BOYER, HW
    ROSENBERG, JM
    NATURE, 1984, 309 (5966) : 327 - 331
  • [6] SALT EFFECTS ON PROTEIN-DNA INTERACTIONS - THE LAMBDA-CI REPRESSOR AND ECORI ENDONUCLEASE
    MISRA, VK
    HECHT, JL
    SHARP, KA
    FRIEDMAN, RA
    HONIG, B
    JOURNAL OF MOLECULAR BIOLOGY, 1994, 238 (02) : 264 - 280
  • [7] Signatures of Protein-DNA Recognition in Free DNA Binding Sites
    Locasale, Jason W.
    Napoli, Andrew A.
    Chen, Shengfeng
    Berman, Helen M.
    Lawson, Catherine L.
    JOURNAL OF MOLECULAR BIOLOGY, 2009, 386 (04) : 1054 - 1065
  • [8] The EcoRI-DNA complex as a model for investigating protein-DNA interactions by atomic force microscopy
    Sorel, Isabelle
    Pietrement, Olivier
    Hamon, Loic
    Baconnais, Sonia
    Le Cam, Eric
    Pastre, David
    BIOCHEMISTRY, 2006, 45 (49) : 14675 - 14682
  • [9] Mesoscopic Model and Free Energy Landscape for Protein-DNA Binding Sites: Analysis of Cyanobacterial Promoters
    Tapia-Rojo, Rafael
    Jose Mazo, Juan
    Hernandez, Jose Angel
    Luisa Peleato, Maria
    Fillat, Maria F.
    Falo, Fernando
    PLOS COMPUTATIONAL BIOLOGY, 2014, 10 (10)
  • [10] MECHANISMS OF PROTEIN DNA INTERACTION IN THE ECORI ENDONUCLEASE SYSTEM
    MODRICH, P
    JACK, W
    TERRY, B
    ALBERGO, D
    LU, AL
    CHENG, SC
    RUBIN, R
    BIOCHEMISTRY, 1983, 22 (15) : A26 - A26