Methods to estimate the conformation of proteins and polypeptides from circular dichroism data

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Dept. of Neurosci. and Cell Biology, UMDNJ-Robert Wood Johnson Med. Sch., 675 Hoes Lane, Piscataway, NJ 08854-5635, United States ^{[1
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ANAL. BIOCHEM. | / 1卷 / 1-10期

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I am heavily indebted to Robert W. Woody who provided the FORTRAN source code and compiled copies of the SELCON program and preprints of his recent articles describing both the SELCON method and applications of neural networks to the evaluation of circular dichroism spectra. He also provided an early version of the program; SELCON2; which evaluates the P2 conformation in proteins. W. Curtis Johnson Jr. graciously provided the FORTRAN source code and compiled versions of his VARSLC program. He has also freely made available circular dichroism spectra of a wide variety of proteins which have been useful as standards; both for the work reported in this review and for the work of countless other researchers. Gerald D. Fasman generously provided the compiled version of the CCA and LINCOMB programs which have been of invaluable use. He also provided the C source code and a new software analysis package with both the LINCOMB and CCA programs; which has a more sophisticated user interface currently being developed by Dr. A. Per-czel. Dr. Sergei Yu. Venyaminov generously provided a compiled version of the CONTIN program which runs on personal computers. Dr. Miguel Andrade unsel®shly provided the C source code and compiled code and the weight table for the K2D neural network program. Lawrence E. Green®eld assisted greatly in the compiling of the FORTRAN programs. I also thank Sarah E. Hitchcock-DeGregori and Barbara Brodsky for their support and critical reading of the manuscript. This work was supported by NIH Grants GM36326 and HL35726 to SEHD and by the CD facility at UMDNJ;

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