Observations on the A versus B Equilibrium in Molecular Dynamics Simulations of Duplex DNA and RNA

被引：0

作者：

MacKerell, Jr., Alexander D. ^{[1
]}

机构：

[1] Dept. of Pharmaceutical Sciences, School of Pharmacy, University of Maryland at Baltimore, 20 North Pine Street, Baltimore, MD 21201, United States

来源：

ACS Symposium Series | / 682卷

关键词：

D O I：

暂无

中图分类号：

学科分类号：

摘要：

引用

页码：304 / 311

共 50 条

[41] Observation of a A-DNA to B-DNA transition in a duplex nucleic acid helix using molecular dynamics
Nina, M
BIOPHYSICAL JOURNAL, 2001, 80 (01) : 485A - 485A
[42] Polarizable Force Field for DNA Based on the Classical Drude Oscillator: II. Microsecond Molecular Dynamics Simulations of Duplex DNA
Lemkul, Justin A.
MacKerell, Alexander D., Jr.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 13 (05) : 2072 - 2085
[43] A statistical approach to the interpretation of molecular dynamics simulations of calmodulin equilibrium dynamics
Likic, VA
Gooley, PR
Speed, TP
Strehler, EE
PROTEIN SCIENCE, 2005, 14 (12) : 2955 - 2963
[44] Molecular dynamics simulations of a nucleosome and free DNA
Bishop, TC
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2005, 22 (06): : 673 - 685
[45] Ion motions in molecular dynamics simulations on DNA
Ponomarev, SY
Thayer, KM
Beveridge, DL
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (41) : 14771 - 14775
[46] Molecular dynamics simulations of DNA and its complexes
Khalid, S
Rodger, PM
PROGRESS IN REACTION KINETICS AND MECHANISM, 2004, 29 (03) : 167 - 186
[47] Stabilization of Duplex DNA and RNA by Dangling Ends Studied by Free Energy Simulations
Kara, Mahmut
Zacharias, Martin
BIOPOLYMERS, 2014, 101 (04) : 418 - 427
[48] Insights into the DNA and RNA Interactions of Human Topoisomerase III Beta Using Molecular Dynamics Simulations
Mamun, Yasir
Tse-Dinh, Yuk-Ching
Chapagain, Prem
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2024, 64 (15) : 6062 - 6071
[49] Dynamics of Molecular Clouds: Observations, Simulations, and NIF Experiments
Kane, Jave O.
Martinez, David A.
Pound, Marc W.
Heeter, Robert F.
Casner, Alexis
Mancini, Roberto C.
HIGH POWER LASERS FOR FUSION RESEARCH III, 2015, 9345
[50] B-DNA under stress: over-and untwisting of DNA during molecular dynamics simulations
Kannan, Srinivasaraghavan
Kohlhoff, Kai
Zacharias, Martin
BIOPHYSICAL JOURNAL, 2006, 91 (08) : 2956 - 2965

← 1 2 3 4 5 →