MEGI: a comprehensive annotation dataset of mobile elements for genomic island detection

被引:0
作者
Qian, Ye [1 ]
Chen, Hu [1 ]
Zeng, Yuni [2 ]
Dai, Qi [1 ]
机构
[1] Zhejiang Sci Tech Univ, Coll Life Sci & Med, Hangzhou 310018, Peoples R China
[2] Zhejiang Sci Tech Univ, Coll Comp Sci, Hangzhou 310018, Peoples R China
基金
中国国家自然科学基金;
关键词
D O I
10.1007/s11704-024-40759-2
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
引用
收藏
页数:2
相关论文
共 8 条
[1]   MTGIpick allows robust identification of genomic islands from a single genome [J].
Dai, Qi ;
Bao, Chaohui ;
Hai, Yabing ;
Ma, Sheng ;
Zhou, Tao ;
Wang, Cong ;
Wang, Yunfei ;
Huo, Wenwen ;
Liu, Xiaoqing ;
Yao, Yuhua ;
Xuan, Zhenyu ;
Chen, Min ;
Zhang, Michael Q. .
BRIEFINGS IN BIOINFORMATICS, 2018, 19 (03) :361-373
[2]   IslandViewer update: improved genomic island discovery and visualization [J].
Dhillon, Bhavjinder K. ;
Chiu, Terry A. ;
Laird, Matthew R. ;
Langille, Morgan G. I. ;
Brinkman, Fiona S. L. .
NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) :W129-W132
[3]   Genomic islands in pathogenic and environmental microorganisms [J].
Dobrindt, U ;
Hochhut, B ;
Hentschel, U ;
Hacker, J .
NATURE REVIEWS MICROBIOLOGY, 2004, 2 (05) :414-424
[4]   ICEberg 2.0: an updated database of bacterial integrative and conjugative elements [J].
Liu, Meng ;
Li, Xiaobin ;
Xie, Yingzhou ;
Bi, Dexi ;
Sun, Jingyong ;
Li, Jun ;
Tai, Cui ;
Deng, Zixin ;
Ou, Hong-Yu .
NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) :D660-D665
[5]   The Gypsy Database (GyDB) of mobile genetic elements: release 2.0 [J].
Llorens, Carlos ;
Futami, Ricardo ;
Covelli, Laura ;
Dominguez-Escriba, Laura ;
Viu, Jose M. ;
Tamarit, Daniel ;
Aguilar-Rodriguez, Jose ;
Vicente-Ripolles, Miguel ;
Fuster, Gonzalo ;
Bernet, Guillermo P. ;
Maumus, Florian ;
Munoz-Pomer, Alfonso ;
Sempere, Jose M. ;
Latorre, Amparo ;
Moya, Andres .
NUCLEIC ACIDS RESEARCH, 2011, 39 :D70-D74
[6]   Identification of compositionally distinct regions in genomes using the centroid method [J].
Rajan, Issaac ;
Aravamuthan, Sarang ;
Mande, Sharmila S. .
BIOINFORMATICS, 2007, 23 (20) :2672-2677
[7]   Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models [J].
Waack, Stephan ;
Keller, Oliver ;
Asper, Roman ;
Brodag, Thomas ;
Damm, Carsten ;
Fricke, Wolfgang Florian ;
Surovcik, Katharina ;
Meinicke, Peter ;
Merkl, Rainer .
BMC BIOINFORMATICS, 2006, 7 (1)
[8]   PHAST: A Fast Phage Search Tool [J].
Zhou, You ;
Liang, Yongjie ;
Lynch, Karlene H. ;
Dennis, Jonathan J. ;
Wishart, David S. .
NUCLEIC ACIDS RESEARCH, 2011, 39 :W347-W352