Evolution and legacy of East Asian aurochs

被引:3
作者
Hou, Jiawen [1 ,2 ,3 ]
Guan, Xiwen [1 ]
Xia, Xiaoting [1 ]
Lyu, Yang [1 ]
Liu, Xin [1 ]
Mazei, Yuri [4 ]
Xie, Ping [5 ]
Chang, Fengqin [5 ]
Zhang, Xiaonan [5 ]
Chen, Jialei [1 ]
Li, Xinyi [1 ,2 ,13 ]
Zhang, Fengwei [1 ]
Jin, Liangliang [1 ]
Luo, Xiaoyu [1 ]
Sinding, Mikkel-Holger S. [6 ]
Sun, Xin [6 ]
Achilli, Alessandro [7 ]
Migliore, Nicola Rambaldi [7 ]
Zhang, Dongju [8 ]
Lenstra, Johannes A. [9 ]
Han, Jianlin [10 ,11 ]
Fu, Qiaomei [12 ]
Liu, Xinyi [13 ]
Zhang, Xiaoming [2 ,3 ,14 ]
Chen, Ningbo [1 ]
Lei, Chuzhao [1 ]
Zhang, Hucai [5 ,15 ]
机构
[1] Northwest A&F Univ, Coll Anim Sci & Technol, Key Lab Anim Genet Breeding & Reprod Shaanxi Prov, Yangling 712100, Peoples R China
[2] Chinese Acad Sci, Kunming Inst Zool, Key Lab Genet Evolut & Anim Models, Kunming 650201, Peoples R China
[3] Chinese Acad Sci, Kunming Inst Zool, Yunnan Key Lab Biodivers & Ecol Conservat Gaoligon, Kunming 650201, Peoples R China
[4] Shenzhen MSU BIT Univ, Dept Engn, Shenzhen 518172, Peoples R China
[5] Yunnan Univ, Inst Ecol Res & Pollut Control Plateau Lakes, Sch Ecol & Environm Sci, Kunming 650500, Peoples R China
[6] Univ Copenhagen, Dept Biol, Sect Computat & RNA Biol, DK-1350 Copenhagen, Denmark
[7] Univ Pavia, Dept Biol & Biotechnol L Spallanzani, IT-27100 Pavia, Italy
[8] Lanzhou Univ, Coll Earth & Environm Sci, Key Lab Western Chinas Environm Syst, Minist Educ, Lanzhou 730000, Peoples R China
[9] Univ Utrecht, Fac Vet Med, NL-3584 CS Utrecht, Netherlands
[10] Yazhouwan Natl Lab, Sanya 572024, Peoples R China
[11] Chinese Acad Agr Sci CAAS, Inst Anim Sci, Joint Lab Livestock & Forage Genet Resources, Beijing 100193, Peoples R China
[12] Chinese Acad Sci, Inst Vertebrate Paleontol & Paleoanthropol, Inst Vertebrate Paleontol & Paleoanthropol, Beijing 100044, Peoples R China
[13] Washington Univ St Louis, Anthropol Dept, St Louis, MO 63130 USA
[14] Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming 650201, Peoples R China
[15] Southwest United Grad Sch, Kunming 650500, Peoples R China
基金
中国国家自然科学基金;
关键词
East Asian aurochs; Ancient DNA; Cattle domestication; Adaptive introgression; ANCIENT DNA; ALIGNMENT; DOMESTICATION; ASSOCIATION; RETRIEVAL; FRAMEWORK; ORIGINS; GENOMES; COMPLEX; AGE;
D O I
10.1016/j.scib.2024.09.016
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Aurochs (Bos primigenius), once widely distributed in Afro-Eurasia, became extinct in the early 1600 s. However, their phylogeography and relative contributions to domestic cattle remain unknown. In this study, we analyzed 16 genomes of ancient aurochs and three mitogenomes of ancient bison (Bison priscus) excavated in East Asia, dating from 43,000 to 3,590 years ago. These newly generated data with previously published genomic information on aurochs as well as ancient/extant domestic cattle worldwide through genome analysis. Our findings revealed significant genetic divergence between East Asian aurochs and their European, Near Eastern, and African counterparts on the basis of both mitochondrial and nuclear genomic data. Furthermore, we identified evidence of gene flow from East Asian aurochs into ancient and present-day taurine cattle, suggesting their potential role in facilitating the environmental adaptation of domestic cattle. (c) 2024 The Authors. Published by Elsevier B.V. and Science China Press. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
引用
收藏
页码:3425 / 3433
页数:9
相关论文
共 60 条
[1]   Mitochondrial genomes of extinct aurochs survive in domestic cattle [J].
Achilli, Alessandro ;
Olivieri, Anna ;
Pellecchia, Marco ;
Uboldi, Cristina ;
Colli, Licia ;
Al-Zahery, Nadia ;
Accetturo, Matteo ;
Pala, Maria ;
Kashani, Baharak Hooshiar ;
Perego, Ugo A. ;
Battaglia, Vincenza ;
Fornarino, Simona ;
Kalamati, Javad ;
Houshmand, Massoud ;
Negrini, Riccardo ;
Semino, Ornella ;
Richards, Martin ;
Macaulay, Vincent ;
Ferretti, Luca ;
Bandelt, Hans-Juergen ;
Ajmone-Marsan, Paolo ;
Torroni, Antonio .
CURRENT BIOLOGY, 2008, 18 (04) :R157-R158
[2]   The Multifaceted Origin of Taurine Cattle Reflected by the Mitochondrial Genome [J].
Achilli, Alessandro ;
Bonfiglio, Silvia ;
Olivieri, Anna ;
Malusa, Arianna ;
Pala, Maria ;
Kashani, Baharak Hooshiar ;
Perego, Ugo A. ;
Ajmone-Marsan, Paolo ;
Liotta, Luigi ;
Semino, Ornella ;
Bandelt, Hans-Juergen ;
Ferretti, Luca ;
Torroni, Antonio .
PLOS ONE, 2009, 4 (06)
[3]   Emerging evidence of plant domestication as a landscape-level process [J].
Allaby, Robin G. ;
Stevens, Chris J. ;
Kistler, Logan ;
Fuller, Dorian Q. .
TRENDS IN ECOLOGY & EVOLUTION, 2022, 37 (03) :268-279
[4]   Modern Taurine Cattle Descended from Small Number of Near-Eastern Founders [J].
Bollongino, Ruth ;
Burger, Joachim ;
Powell, Adam ;
Mashkour, Marjan ;
Vigne, Jean-Denis ;
Thomas, Mark G. .
MOLECULAR BIOLOGY AND EVOLUTION, 2012, 29 (09) :2101-2104
[5]   Origin and Spread of Bos taurus: New Clues from Mitochondrial Genomes Belonging to Haplogroup T1 [J].
Bonfiglio, Silvia ;
Ginja, Catarina ;
De Gaetano, Anna ;
Achilli, Alessandro ;
Olivieri, Anna ;
Colli, Licia ;
Tesfaye, Kassahun ;
Agha, Saif Hassan ;
Gama, Luis T. ;
Cattonaro, Federica ;
Penedo, M. Cecilia T. ;
Ajmone-Marsan, Paolo ;
Torroni, Antonio ;
Ferretti, Luca .
PLOS ONE, 2012, 7 (06)
[6]   BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis [J].
Bouckaert, Remco ;
Vaughan, Timothy G. ;
Barido-Sottani, Joelle ;
Duchene, Sebastian ;
Fourment, Mathieu ;
Gavryushkina, Alexandra ;
Heled, Joseph ;
Jones, Graham ;
Kuehnert, Denise ;
De Maio, Nicola ;
Matschiner, Michael ;
Mendes, Fabio K. ;
Mueller, Nicola F. ;
Ogilvie, Huw A. ;
du Plessis, Louis ;
Popinga, Alex ;
Rambaut, Andrew ;
Rasmussen, David ;
Siveroni, Igor ;
Suchard, Marc A. ;
Wu, Chieh-Hsi ;
Xie, Dong ;
Zhang, Chi ;
Stadler, Tanja ;
Drummond, Alexei J. .
PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (04)
[7]   Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes [J].
Briggs, Adrian W. ;
Good, Jeffrey M. ;
Green, Richard E. ;
Krause, Johannes ;
Maricic, Tomislav ;
Stenzel, Udo ;
Lalueza-Fox, Carles ;
Rudan, Pavao ;
Brajkovic, Dejana ;
Kucan, Zeljko ;
Gusic, Ivan ;
Schmitz, Ralf ;
Doronichev, Vladimir B. ;
Golovanova, Liubov V. ;
de la Rasilla, Marco ;
Fortea, Javier ;
Rosas, Antonio ;
Paeaebo, Svante .
SCIENCE, 2009, 325 (5938) :318-321
[8]   New insights into the origins of oracle bone divination: Ancient DNA from Late Neolithic Chinese bovines [J].
Brunson, Katherine ;
Zhao, Xin ;
He, Nu ;
Dai, Xiangming ;
Rodrigues, Antonia ;
Yang, Dongya .
JOURNAL OF ARCHAEOLOGICAL SCIENCE, 2016, 74 :35-44
[9]   Ancient DNA reveals evidence of abundant aurochs (Bos primigenius) in Neolithic Northeast China [J].
Cai, Dawei ;
Zhang, Naifan ;
Zhu, Siqi ;
Chen, Quanjia ;
Wang, Lixin ;
Zhao, Xin ;
Ma, Xiaolin ;
Royle, Thomas C. A. ;
Zhou, Hui ;
Yang, Dongya Y. .
JOURNAL OF ARCHAEOLOGICAL SCIENCE, 2018, 98 :72-80
[10]   Evidence for early domestic yak, taurine cattle, and their hybrids on the Tibetan Plateau [J].
Chen, Ningbo ;
Zhang, Zhengwei ;
Hou, Jiawen ;
Chen, Jialei ;
Gao, Xuan ;
Tang, Li ;
Wangdue, Shargan ;
Zhang, Xiaoming ;
Sinding, Mikkel-Holger S. ;
Liu, Xuexue ;
Han, Jianlin ;
Lu, Hongliang ;
Lei, Chuzhao ;
Marshall, Fiona ;
Liu, Xinyi .
SCIENCE ADVANCES, 2023, 9 (50)