A theoretical investigation into the impact of solvents (alkanolic and non-alkanolic), structural and spectroscopic properties, donor-acceptor insights, Hirshfeld surface, and molecular docking of the anti-tumor compound (2E)-3-[4-(dimethylamino)phenyl]-1-(3-nitrophenyl) prop-2-en-1-one

被引:5
作者
Kumar, A. Ram [1 ]
Selvaraj, S. [2 ]
Vickram, A. S. [1 ]
Thirunavukkarasu, M. [3 ]
Samdani, Mohammad Shahzad [4 ]
Priya, S. D. [5 ]
Balu, Ranjith [6 ]
机构
[1] Saveetha Univ, Saveetha Inst Med & Tech Sci SIMATS, Saveetha Sch Engn, Dept Biotechnol, Chennai 602105, Tamil Nadu, India
[2] Saveetha Univ, Saveetha Inst Med & Tech Sci SIMATS, Saveetha Sch Engn, Dept Phys, Chennai 602105, Tamil Nadu, India
[3] Vel Tech Rangarajan Dr Sagunthala R&D Inst Sci & T, Dept Phys, Chennai 600062, Tamil Nadu, India
[4] King Saud Univ, Coll Sci, PO Box 2455, Riyadh 11451, Saudi Arabia
[5] Univ Tarapaca, Inst Alta Invest, Arica 1000000, Chile
[6] Lovely Profess Univ, Div Res & Dev Cell, Phagwara 144411, Punjab, India
关键词
FMO; MEP; Hirshfeld surface; NBO; Solvent-solute interactions; Molecular docking; CHALCONE DERIVATIVES; PERTURBATION-THEORY; NMR; ANTIFUNGAL; PROGRAM;
D O I
10.1016/j.molstruc.2024.140708
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this study, computational methods were employed to analyze the molecular structure of (2E)-3-[4-(Dimethylamino)phenyl]-1-(3-nitrophenyl)prop-2-en-1-one (DMAPNP), investigating its structural and spectroscopic properties along with its biological activity. In particular, the Frontier Molecular Orbital (FMO) and Molecular Electrostatic Potential (MEP) surfaces in alkanolic solvents (ethanediol, ethanol, and methanol) and nonalkanolic solvents (DMSO, toluene, and water) were generated to analyze the solvent-solute interactions. The H -> L transition shows low oscillator strengths (0.0002 in toluene to 0.0013 in ethanediol, DMSO, and water), indicating limited significance in the absorption spectrum. In contrast, the H -> L+1 transition has much higher oscillator strengths, around 0.9412 for ethanediol and 0.9385 for DMSO and toluene, suggesting a greater likelihood of absorption at these wavelengths. The simulated vibrational wavenumbers revealed the presence of CH, NO2, CN, CC, CH3, and C=O groups in DMAPNP. The calculated chemical shifts confirmed the molecular structure of DMAPNP and aligned with standard values. In Hirshfeld surface analysis, the crystal packing of DMAPNP was primarily stabilized by H...H interactions, contributing 41.3%, followed by O...H / H...O interactions at 30.9%. In Natural Bond Orbital (NBO) analysis, the interaction between C20-H38 and C15-H33 shows a stabilization energy of 1102.89 kJ/mol, highlighting sigma-sigma* transitions. In contrast, the C12-C16 and C15-H33 interactions exhibit a stabilization energy of 2542.16 kJ/mol, indicating substantial pi-sigma* contributions. In the Mulliken charge distribution, the carbon atoms C18 (-1.33704e) and C13 (1.776064e), located in the para and meta positions concerning the nitro group (NO2), exhibit the highest positive and negative potentials, respectively. Molecular docking assessed DMAPNP as a potential anti-tumor agent by inhibiting the key regulatory enzyme fructose-2,6-bisphosphatase, with a binding energy of -8.13 kcal/mol.
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页数:11
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