Artificial intelligence in food bioactive peptides screening: Recent advances and future prospects

被引:8
作者
Chang, Jingru [4 ]
Wang, Haitao [1 ,2 ,3 ]
Su, Wentao [1 ,2 ,3 ]
He, Xiaoyang [4 ,5 ]
Tan, Mingqian [1 ,2 ,3 ]
机构
[1] Dalian Polytech Univ, State Key Lab Marine Food Proc & Safety Control, Dalian 116034, Liaoning, Peoples R China
[2] Dalian Polytech Univ, Acad Food Interdisciplinary Sci, Sch Food Sci & Technol, Dalian 116034, Liaoning, Peoples R China
[3] Dalian Polytech Univ, Natl Engn Res Ctr Seafood, Dalian 116034, Liaoning, Peoples R China
[4] Dalian Polytech Univ, Dalian Key Lab Precis Nutr, Dalian 116034, Liaoning, Peoples R China
[5] Dalian Polytech Univ, Sch Informat Sci & Engn, Dalian 116034, Liaoning, Peoples R China
关键词
Artificial intelligence; Food-derived bioactive peptides; Machine learning; Deep learning; High-throughput screening; Food-specific large models; PREDICTION; BIOAVAILABILITY; IDENTIFY; ENSEMBLE; MODEL;
D O I
10.1016/j.tifs.2024.104845
中图分类号
TS2 [食品工业];
学科分类号
0832 ;
摘要
Background: Food-derived bioactive peptides (FBPs) play a vital role in nutrition and health. Traditional experimental approaches for identifying FBPs are often labor-intensive, time-consuming, and costly. In contrast, computational approaches, for example, virtual screening and molecular dynamics simulations, have their own limitations. Artificial intelligence (AI) technology enables high-throughput screening and analysis of activity mechanisms for FBPs. Ongoing AI research will enhance the in-depth development and application of FBPs. Scope and approach: This review outlines the general process of AI screening for FBPs, including data foundation, molecular feature representation, machine learning and deep learning model construction and training, as well as evaluation and validation. It also summarizes recent research advances in AI screening of FBPs with different bioactivities, discusses current key issues and challenges, and highlights future research directions and trends of FBPs. Key findings and conclusions: Significant advancements have been made in utilizing AI screening methods to identify functional FBPs with anti-inflammatory, antibacterial, antioxidant, flavor-enhancing, and hypotensive properties, while the research on anti-obesity and anti-fatigue peptides is still at a nascent stage. Deep learning has demonstrated clear predictive advantages over traditional machine learning techniques. However, challenges remain when screening for peptides with different biological activities. Moving forward, data augmentation strategies should be developed within food-specific large models, and a universal deep learning framework based on multi-scale chemical space features should be created to predict peptide-target dynamic interactions. A highthroughput screening framework should be established, alongside enhanced research on AI methods for multifunctional properties like anti-obesity and anti-fatigue effects.
引用
收藏
页数:15
相关论文
共 83 条
[1]   PepNN: a deep attention model for the identification of peptide binding sites [J].
Abdin, Osama ;
Nim, Satra ;
Wen, Han ;
Kim, Philip M. .
COMMUNICATIONS BIOLOGY, 2022, 5 (01)
[2]   Accurate structure prediction of biomolecular interactions with AlphaFold 3 [J].
Abramson, Josh ;
Adler, Jonas ;
Dunger, Jack ;
Evans, Richard ;
Green, Tim ;
Pritzel, Alexander ;
Ronneberger, Olaf ;
Willmore, Lindsay ;
Ballard, Andrew J. ;
Bambrick, Joshua ;
Bodenstein, Sebastian W. ;
Evans, David A. ;
Hung, Chia-Chun ;
O'Neill, Michael ;
Reiman, David ;
Tunyasuvunakool, Kathryn ;
Wu, Zachary ;
Zemgulyte, Akvile ;
Arvaniti, Eirini ;
Beattie, Charles ;
Bertolli, Ottavia ;
Bridgland, Alex ;
Cherepanov, Alexey ;
Congreve, Miles ;
Cowen-Rivers, Alexander I. ;
Cowie, Andrew ;
Figurnov, Michael ;
Fuchs, Fabian B. ;
Gladman, Hannah ;
Jain, Rishub ;
Khan, Yousuf A. ;
Low, Caroline M. R. ;
Perlin, Kuba ;
Potapenko, Anna ;
Savy, Pascal ;
Singh, Sukhdeep ;
Stecula, Adrian ;
Thillaisundaram, Ashok ;
Tong, Catherine ;
Yakneen, Sergei ;
Zhong, Ellen D. ;
Zielinski, Michal ;
Zidek, Augustin ;
Bapst, Victor ;
Kohli, Pushmeet ;
Jaderberg, Max ;
Hassabis, Demis ;
Jumper, John M. .
NATURE, 2024, 630 (8016) :493-500
[3]   Anti-obesity and anti-diabetic bioactive peptides: A comprehensive review of their sources, properties, and techno-functional challenges [J].
Ashaolu, Tolulope Joshua ;
Olatunji, Opeyemi Joshua ;
Karaca, Asli Can ;
Lee, Chi-Ching ;
Jafari, Seid Mahdi .
FOOD RESEARCH INTERNATIONAL, 2024, 187
[4]  
Baek M, 2023, bioRxiv, DOI [10.1101/2023.05.24.542179, 10.1101/2023.05.24.542179, DOI 10.1101/2023.05.24.542179]
[5]   ConjuPepDB: a database of peptide-drug conjugates [J].
Balogh, Balazs ;
Ivanczi, Marton ;
Nizami, Bilal ;
Beke-Somfai, Tamas ;
Mandity, Istvan M. .
NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D1102-D1112
[6]   ADP-Fuse: A novel two-layer machine learning predictor to identify antidiabetic peptides and diabetes types using multiview information [J].
Basith, Shaherin ;
Pham, Nhat Truong ;
Song, Minkyung ;
Lee, Gwang ;
Manavalan, Balachandran .
COMPUTERS IN BIOLOGY AND MEDICINE, 2023, 165
[7]   Prediction of bitterant and sweetener using structure-taste relationship models based on an artificial neural network [J].
Bo, Weichen ;
Qin, Dongya ;
Zheng, Xin ;
Wang, Yue ;
Ding, Botian ;
Li, Yinghong ;
Liang, Guizhao .
FOOD RESEARCH INTERNATIONAL, 2022, 153
[8]  
Brooks Tim, 2024, Video generation models as world simulators
[9]   Using an Ensemble to Identify and Classify Macroalgae Antimicrobial Peptides [J].
Caprani, Michela Chiara ;
Healy, John ;
Slattery, Orla ;
O'Keeffe, Joan .
INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, 2021, 13 (02) :321-333
[10]   Virtual Screening for Biomimetic Anti-Cancer Peptides from Cordyceps militaris Putative Pepsinized Peptidome and Validation on Colon Cancer Cell Line [J].
Chantawannakul, Jarinyagon ;
Chatpattanasiri, Paninnuch ;
Wattayagorn, Vichugorn ;
Kongsema, Mesayamas ;
Noikaew, Tipanart ;
Chumnanpuen, Pramote .
MOLECULES, 2021, 26 (19)