Dendrochronology;
Deep learning;
Semantic segmentation;
D O I:
10.1016/j.inpa.2023.10.002
中图分类号:
S [农业科学];
学科分类号:
09 ;
摘要:
Tree-ring dating enables gathering necessary knowledge about trees, and it is essential in many areas, including forest management and the timber industry. Tree-ring dating can be conducted on either wood's clean crosssections or tree trunks' rough end cross-sections. However, the measurement process is still time-consuming and frequently requires experts who use special devices, such as stereoscopes. Modern approaches based on image processing using deep learning have been successfully applied in many areas, and they can succeed in recognizing tree rings. While supervised deep learning-based methods often produce excellent results, they also depend on extensive datasets of tediously annotated data. To our knowledge, there are only a few publicly available ring image datasets with annotations. We introduce a new carefully captured dataset of images of hardwood species automatically annotated for tree ring detection. We capture each wood cookie twice, once in the rough form, similar to industrial settings, and then after careful cleaning, that reveals all growth rings. We carefully overlap the images and use them for an automatic ring annotation in the rough data. We then use the Feature Pyramid Network with Resnet encoder that obtains an overall pixel-level area under the curve score of 85.72% and ring level F1 score of 0.7348. The data and code are available at https://github.com/wufanyou/growth-ring-detection.
机构:
Vilnius Gediminas Tech Univ VILNIUS TECH, Dept Elect Syst, Plytines G 25, LT-10105 Vilnius, LithuaniaVilnius Gediminas Tech Univ VILNIUS TECH, Dept Elect Syst, Plytines G 25, LT-10105 Vilnius, Lithuania
机构:
Univ Iowa, Hosp & Clin, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
Iowa City Vet Affairs Med Ctr, Iowa City, IA USA
IDx LLC, Iowa City, IA USAUniv Iowa, Hosp & Clin, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
Abramoff, Michael David
Lou, Yiyue
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机构:
Univ Iowa, Dept Stat, Coll Publ Hlth, Iowa City, IA USAUniv Iowa, Hosp & Clin, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
Lou, Yiyue
Erginay, Ali
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h-index: 0
机构:
Hop Lariboisiere, AP HP, Serv Ophtalmol, Paris, FranceUniv Iowa, Hosp & Clin, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
Erginay, Ali
Clarida, Warren
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机构:
IDx LLC, Iowa City, IA USAUniv Iowa, Hosp & Clin, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
Clarida, Warren
Amelon, Ryan
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机构:
IDx LLC, Iowa City, IA USAUniv Iowa, Hosp & Clin, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
Amelon, Ryan
Folk, James C.
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机构:
Univ Iowa, Hosp & Clin, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
IDx LLC, Iowa City, IA USAUniv Iowa, Hosp & Clin, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
Folk, James C.
Niemeijer, Meindert
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机构:
IDx LLC, Iowa City, IA USAUniv Iowa, Hosp & Clin, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
机构:
Univ Sao Paulo, Forest Sci Dept, Av Padua Dias 11, Piracicaba, SP, BrazilMil Inst Engn IME, Cartog Engn Sect, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, RJ, Brazil
Alves de Almeida, Danilo Roberti
Papa, Daniel de Almeida
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机构:
Embrapa Acre, Rodovia BR 364,Km 14, BR-69900056 Rio Branco, AC, BrazilMil Inst Engn IME, Cartog Engn Sect, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, RJ, Brazil
Papa, Daniel de Almeida
Silva Minervino, Juliano Baldez
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h-index: 0
机构:
Univ Fed Acre, Rodovia BR 364,Km 04 Dist Ind, BR-69920900 Rio Branco, AC, BrazilMil Inst Engn IME, Cartog Engn Sect, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, RJ, Brazil
Silva Minervino, Juliano Baldez
Pessoa Veras, Hudson Franklin
论文数: 0引用数: 0
h-index: 0
机构:
Fed Univ Parana UFPR, Dept Forestry, Pref Lothario Meissner Ave 900, BR-80210170 Curitiba, Parana, BrazilMil Inst Engn IME, Cartog Engn Sect, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, RJ, Brazil
Pessoa Veras, Hudson Franklin
Formighieri, Arthur
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h-index: 0
机构:
Univ Fed Acre, Rodovia BR 364,Km 04 Dist Ind, BR-69920900 Rio Branco, AC, BrazilMil Inst Engn IME, Cartog Engn Sect, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, RJ, Brazil
Formighieri, Arthur
Nascimento Santos, Caio Alexandre
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机构:
Embrapa Acre, Rodovia BR 364,Km 14, BR-69900056 Rio Branco, AC, BrazilMil Inst Engn IME, Cartog Engn Sect, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, RJ, Brazil
Nascimento Santos, Caio Alexandre
Dantas Ferreira, Marcio Aurelio
论文数: 0引用数: 0
h-index: 0
机构:
Technol Fdn Acre State, BR-69920202 Rio Branco, AC, BrazilMil Inst Engn IME, Cartog Engn Sect, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, RJ, Brazil
Dantas Ferreira, Marcio Aurelio
Figueiredo, Evandro Orfano
论文数: 0引用数: 0
h-index: 0
机构:
Embrapa Acre, Rodovia BR 364,Km 14, BR-69900056 Rio Branco, AC, BrazilMil Inst Engn IME, Cartog Engn Sect, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, RJ, Brazil
Figueiredo, Evandro Orfano
Linhares Ferreira, Evandro Jose
论文数: 0引用数: 0
h-index: 0
机构:
Natl Inst Amazonian Res INPA, Estr Dias Martins 3868, BR-69917560 Rio Branco, AC, BrazilMil Inst Engn IME, Cartog Engn Sect, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, RJ, Brazil
机构:
Sichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Li, Yuan
Niu, Chaoqun
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Coll Comp Sci, Chengdu 610065, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Niu, Chaoqun
Wang, Jian
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Coll Comp Sci, Chengdu 610065, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Wang, Jian
Xu, Yong
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Coll Comp Sci, Chengdu 610065, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Xu, Yong
Dai, Hao
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Pathol, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Dai, Hao
Xiong, Tu
论文数: 0引用数: 0
h-index: 0
机构:
Peoples Hosp Leshan, Dept Radiol, Leshan 614000, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Xiong, Tu
Yu, Dong
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h-index: 0
机构:
Peoples Hosp Leshan, Dept Radiol, Leshan 614000, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Yu, Dong
Guo, Huili
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机构:
Sichuan Univ, West China Hosp, Dept Radiol, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Guo, Huili
Liang, Weibo
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Liang, Weibo
Deng, Zhenhua
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Pathol, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Deng, Zhenhua
Lv, Jiancheng
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Coll Comp Sci, Chengdu 610065, Sichuan, Peoples R China
Sichuan Univ, Coll Comp Sci, 24 South Sect 1,Yihuan Rd, Chengdu 610065, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Lv, Jiancheng
Zhang, Lin
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机构:
Sichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
Sichuan Univ, West China Sch Preclin & Forens Med, Dept Forens Genet, Postal Address 3,17 South Renmin Rd, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, West China Sch Basic Med Sci & Forens Med, Dept Forens Genet, Chengdu 610041, Sichuan, Peoples R China
机构:
Department of Forest Resources, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic ofDepartment of Forest, Environment and Systems, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic of
Lim, Wontaek
Chang, Byungwoo
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机构:
Department of Forest Resources, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic ofDepartment of Forest, Environment and Systems, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic of
Chang, Byungwoo
Jeong, Jinah
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h-index: 0
机构:
Department of Forest Resources, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic ofDepartment of Forest, Environment and Systems, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic of
Jeong, Jinah
Kim, Inyoo
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h-index: 0
机构:
Department of Forest Resources, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic ofDepartment of Forest, Environment and Systems, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic of
Kim, Inyoo
Park, Chan-Ryul
论文数: 0引用数: 0
h-index: 0
机构:
Urban Forests Division, National Institute of Forest Science, 57 Hoegi-ro, Dongdaemun-gu, Seoul,02455, Korea, Republic ofDepartment of Forest, Environment and Systems, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic of
Park, Chan-Ryul
Ko, Dongwook W.
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机构:
Department of Forest, Environment and Systems, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic ofDepartment of Forest, Environment and Systems, Kookmin University, 77 Jeongneung-ro, Seongbuk-gu, Seoul,02707, Korea, Republic of