An improved biclustering algorithm for gene expression data

被引:0
|
作者
Jin, Sheng-Hua [1 ,2 ,3 ]
Hua, Li [1 ,2 ,3 ]
机构
[1] School of Computer Engineering, Huaiyin Institute of Technology, Huaian,Jiangsu,223003, China
[2] Huaian key Laboratory of the Study and Application of Internet of Things, Huaian,Jiangsu,223003, China
[3] Jiangsu “Internet of Things” Mobile Internet Technology Engineering laboratory, Huaian,Jiangsu,223003, China
来源
关键词
Random processes - Cluster computing - Clustering algorithms - Gene expression - Efficiency;
D O I
暂无
中图分类号
学科分类号
摘要
Cheng-Church (CC) biclustering algorithm is the popular algorithm for the gene expression data mining at present. Only find one biclustering can be found at one time and the biclustering that overlap each other can hardly be found when using this algorithm. This article puts forward a modified algorithm for the gene expression data mining that uses the middle biclustering result to conduct the randomization process, digging up more eligible biclustering data. It also raised a parallel computing method that uses the multi-core processor or cluster environment to improve efficiency. It is proved by experimental verification that the modified algorithm enhances the precision and efficiency of the gene expression data mining to a certain degree. © Jin and Hua.
引用
收藏
页码:1141 / 1144
相关论文
共 50 条
  • [41] An improved algorithm for clustering gene expression data
    Bandyopadhyay, Sanghamitra
    Mukhopadhyay, Anirban
    Maulik, Ujjwal
    BIOINFORMATICS, 2007, 23 (21) : 2859 - 2865
  • [42] A novel biclustering of gene expression data based on hybrid BAFS-BSA algorithm
    Yan Cui
    Rui Zhang
    Huacheng Gao
    Yuanyuan Lu
    Yinqiu Liu
    Guangwei Gao
    Multimedia Tools and Applications, 2020, 79 : 14811 - 14824
  • [43] Distributed robust biclustering algorithm for gene expression analysis
    Tchagang, Alain B.
    Tewfik, Ahmed H.
    2007 IEEE INTERNATIONAL WORKSHOP ON GENOMIC SIGNAL PROCESSING AND STATISTICS, 2007, : 50 - +
  • [44] A binary biclustering algorithm based on the adjacency difference matrix for gene expression data analysis
    Chu, He-Ming
    Liu, Jin-Xing
    Zhang, Ke
    Zheng, Chun-Hou
    Wang, Juan
    Kong, Xiang-Zhen
    BMC BIOINFORMATICS, 2022, 23 (01)
  • [45] A novel biclustering of gene expression data based on hybrid BAFS-BSA algorithm
    Cui, Yan
    Zhang, Rui
    Gao, Huacheng
    Lu, Yuanyuan
    Liu, Yinqiu
    Gao, Guangwei
    MULTIMEDIA TOOLS AND APPLICATIONS, 2020, 79 (21-22) : 14811 - 14824
  • [46] A binary biclustering algorithm based on the adjacency difference matrix for gene expression data analysis
    He-Ming Chu
    Jin-Xing Liu
    Ke Zhang
    Chun-Hou Zheng
    Juan Wang
    Xiang-Zhen Kong
    BMC Bioinformatics, 23
  • [47] A New Hybrid Cuckoo Search Algorithm for Biclustering of Microarray Gene-Expression Data
    Balamurugan, R.
    Natarajan, A. M.
    Premalatha, K.
    APPLIED ARTIFICIAL INTELLIGENCE, 2018, 32 (7-8) : 644 - 659
  • [48] UniBic: Sequential row-based biclustering algorithm for analysis of gene expression data
    Zhenjia Wang
    Guojun Li
    Robert W. Robinson
    Xiuzhen Huang
    Scientific Reports, 6
  • [49] Evolutionary Local Search Algorithm for the biclustering of gene expression data based on biological knowledge
    Maatouk, Ons
    Ayadi, Wassim
    Bouziri, Hend
    Duval, Beatrice
    APPLIED SOFT COMPUTING, 2021, 104
  • [50] Biclustering expression data using node addition algorithm
    Borah, B.
    Bhattacharyya, D. K.
    ADCOM 2007: PROCEEDINGS OF THE 15TH INTERNATIONAL CONFERENCE ON ADVANCED COMPUTING AND COMMUNICATIONS, 2007, : 307 - 312