Machine learning approaches for improving atomic force microscopy instrumentation and data analytics

被引:9
作者
Masud, Nabila [1 ]
Rade, Jaydeep [1 ]
Hasib, Md. Hasibul Hasan [1 ]
Krishnamurthy, Adarsh [1 ,2 ]
Sarkar, Anwesha [1 ]
机构
[1] Iowa State Univ, Elect & Comp Engn, Ames, IA 50011 USA
[2] Iowa State Univ, Mech Engn, Ames, IA USA
基金
美国国家科学基金会;
关键词
atomic force microscopy; nanomechanical properties; artificial intelligence; machine learning; deep learning; NANOMECHANICAL PROPERTIES; AFM; VISUALIZATION; SYSTEMS; CELLS;
D O I
10.3389/fphy.2024.1347648
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Atomic force microscopy (AFM) is a part of the scanning probe microscopy family. It provides a platform for high-resolution topographical imaging, surface analysis as well as nanomechanical property mapping for stiff and soft samples (live cells, proteins, and other biomolecules). AFM is also crucial for measuring single-molecule interaction forces and important parameters of binding dynamics for receptor-ligand interactions or protein-protein interactions on live cells. However, performing AFM measurements and the associated data analytics are tedious, laborious experimental procedures requiring specific skill sets and continuous user supervision. Significant progress has been made recently in artificial intelligence (AI) and deep learning (DL), extending into microscopy. In this review, we summarize how researchers have implemented machine learning approaches so far to improve the performance of atomic force microscopy (AFM), make AFM data analytics faster, and make data measurement procedures high-throughput. We also shed some light on the different application areas of AFM that have significantly benefited from applications of machine learning frameworks and discuss the scope and future possibilities of these crucial approaches.
引用
收藏
页数:17
相关论文
共 50 条
[21]   Advanced Machine Learning and Statistical Inference Approaches for Big Data Analytics and Information Fusion [J].
Mehra, Raman K. ;
Gandhe, Avinash ;
Mansinghka, Vikash ;
Shafto, Patrick ;
Lovell, Dan ;
Yu, Ssu-Hsin .
SIGNAL PROCESSING, SENSOR FUSION, AND TARGET RECOGNITION XXII, 2013, 8745
[22]   Machine Learning With Big Data: Challenges and Approaches [J].
L'Heureux, Alexandra ;
Grolinger, Katarina ;
Elyamany, Hany F. ;
Capretz, Miriam A. M. .
IEEE ACCESS, 2017, 5 :7776-7797
[23]   eXplainable and Reliable Against Adversarial Machine Learning in Data Analytics [J].
Vaccari, Ivan ;
Carlevaro, Alberto ;
Narteni, Sara ;
Cambiaso, Enrico ;
Mongelli, Maurizio .
IEEE ACCESS, 2022, 10 :83949-83970
[24]   Detection and classification of hepatocytes and hepatoma cells using atomic force microscopy and machine learning algorithms [J].
Zeng, Yi ;
Liu, Xianping ;
Wang, Zuobin ;
Gao, Wei ;
Li, Li ;
Zhang, Shengli .
MICROSCOPY RESEARCH AND TECHNIQUE, 2023, 86 (08) :1047-1056
[25]   Machine learning and artificial intelligence: Enabling the clinical translation of atomic force microscopy-based biomarkers for cancer diagnosis [J].
O'Dowling, Aidan T. ;
Rodriguez, Brian J. ;
Gallagher, Tom K. ;
Thorpe, Stephen D. .
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 24 :661-671
[26]   Machine learning for Big Data analytics in plants [J].
Ma, Chuang ;
Zhang, Hao Helen ;
Wang, Xiangfeng .
TRENDS IN PLANT SCIENCE, 2014, 19 (12) :798-808
[27]   Machine Learning and Data Analytics in Pervasive Health [J].
Oliver, Nuria ;
Mayora, Oscar ;
Marschollek, Michael .
METHODS OF INFORMATION IN MEDICINE, 2018, 57 (04) :194-196
[28]   Improving Accuracy of Sample Surface Topography by Atomic Force Microscopy [J].
Xu, Mingsheng ;
Fujita, Daisuke ;
Onishi, Keiko ;
Miyazawa, Kunichi .
JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY, 2009, 9 (10) :6003-6007
[29]   Quantifying the Dynamics of Protein Self-Organization Using Deep Learning Analysis of Atomic Force Microscopy Data [J].
Ziatdinov, Maxim ;
Zhang, Shuai ;
Dollar, Orion ;
Pfaendtner, Jim ;
Mundy, Christopher J. ;
Li, Xin ;
Pyles, Harley ;
Baker, David ;
De Yoreo, James J. ;
Kalinin, Sergei, V .
NANO LETTERS, 2021, 21 (01) :158-165
[30]   Identifying Applications of Machine Learning and Data Analytics Based Approaches for Optimization of Upstream Petroleum Operations [J].
Pandey, Rakesh Kumar ;
Dahiya, Anil Kumar ;
Mandal, Ajay .
ENERGY TECHNOLOGY, 2021, 9 (01)