Self-supervised few-shot medical image segmentation with spatial transformations

Deep learning-based segmentation models often struggle to achieve optimal performance when encountering new, unseen semantic classes. Their effectiveness hinges on vast amounts of annotated data and high computational resources for training. However, a promising solution to mitigate these challenges is the adoption of few-shot segmentation (FSS) networks, which can train models with reduced annotated data. The inherent complexity of medical images limits the applicability of FSS in medical imaging, despite its potential. Recent advancements in self-supervised label-efficient FSS models have demonstrated remarkable efficacy in medical image segmentation tasks. This paper presents a novel FSS architecture that enhances segmentation accuracy by utilising fewer features than existing methodologies. Additionally, this paper proposes a novel self-supervised learning approach that utilises supervoxel and augmented superpixel images to further enhance segmentation accuracy. This paper assesses the efficacy of the proposed model on two different datasets: abdominal magnetic resonance imaging (MRI) and cardiac MRI. The proposed model achieves a mean dice score and mean intersection over union of 81.62% and 70.38% for abdominal images, and 79.38% and 65.23% for cardiac images. © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2024.