Structure function analysis of ADP-dependent cyanobacterial phosphofructokinase reveals new phylogenetic grouping in the PFK-A family

被引:1
作者
Shen, Lu [1 ]
Peraglie, Carmen [1 ]
Podlesainski, David [2 ]
Stracke, Christina [1 ]
Ojha, Ravi Shankar [1 ]
Caliebe, Frauke [3 ]
Kaiser, Markus [2 ]
Forchhammer, Karl [4 ]
Hagemann, Martin [5 ]
Gutekunst, Kirstin [3 ]
Snoep, Jacky L. [1 ,6 ,7 ]
Brasen, Christopher [1 ]
Siebers, Bettina [1 ]
机构
[1] Univ Duisburg Essen, Fac Chem, Ctr Water & Environm Res CWE, Mol Enzyme Technol & Biochem MEB,Environm Microbio, Essen, Germany
[2] Univ Duisburg Essen, Fac Biol, Ctr Med Biotechnol ZMB, Chem Biol, Essen, Germany
[3] Univ Kassel, Mol Pflanzenphysiol, Kassel, Germany
[4] Univ Tubingen, Microbiol, Tubingen, Germany
[5] Univ Rostock, Plant Physiol, Rostock, Germany
[6] Univ Stellenbosch, Biochem, Stellenbosch, South Africa
[7] Vrije Univ Amsterdam, Mol Cell Biol, Amsterdam, Netherlands
关键词
METABOLIC FLUX ANALYSIS; SP PCC 6803; PHOTOMIXOTROPHIC METABOLISM; STREPTOMYCES-COELICOLOR; CRYSTAL-STRUCTURE; GREEN-ALGA; ATP; EVOLUTION; ENZYMES; PATHWAY;
D O I
10.1016/j.jbc.2024.107868
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Depending on the light conditions, photosynthetic organisms switch between carbohydrate synthesis or breakdown, for which the reversibility of carbohydrate metabolism, including glycolysis, is essential. Kinetic regulation of phosphofructokinase (PFK), a key-control point in glycolysis, was studied in the cyanobacterium Synechocystis sp. PCC 6803. The two PFK isoenzymes (PFK- A1, PFK-A2), were found to use ADP instead of ATP, and have similar kinetic characteristics, but differ in their allosteric regulation. PFK-A1 is inhibited by 3phosphoglycerate, a product of the Calvin-Benson-Bassham cycle, while PFK-A2 is inhibited by ATP, which is provided by photosynthesis. This regulation enables cyanobacteria to switch PFK off in light, and on in darkness. ADP dependence has not been reported before for the PFK-A enzyme family and was thought to be restricted to the PFK-B ribokinase superfamily. Phosphate donor specificity within the PFK-A family could be related to specific binding motifs in ATP-, ADP-, and PPi-dependent PFK-As. Phylogenetic analysis revealed a distribution of ADP-PFK-As in cyanobacteria and in a few alphaproteobacteria, which was confirmed in enzymatic studies.
引用
收藏
页数:12
相关论文
共 62 条
[21]   Highly accurate protein structure prediction with AlphaFold [J].
Jumper, John ;
Evans, Richard ;
Pritzel, Alexander ;
Green, Tim ;
Figurnov, Michael ;
Ronneberger, Olaf ;
Tunyasuvunakool, Kathryn ;
Bates, Russ ;
Zidek, Augustin ;
Potapenko, Anna ;
Bridgland, Alex ;
Meyer, Clemens ;
Kohl, Simon A. A. ;
Ballard, Andrew J. ;
Cowie, Andrew ;
Romera-Paredes, Bernardino ;
Nikolov, Stanislav ;
Jain, Rishub ;
Adler, Jonas ;
Back, Trevor ;
Petersen, Stig ;
Reiman, David ;
Clancy, Ellen ;
Zielinski, Michal ;
Steinegger, Martin ;
Pacholska, Michalina ;
Berghammer, Tamas ;
Bodenstein, Sebastian ;
Silver, David ;
Vinyals, Oriol ;
Senior, Andrew W. ;
Kavukcuoglu, Koray ;
Kohli, Pushmeet ;
Hassabis, Demis .
NATURE, 2021, 596 (7873) :583-+
[22]   From genome to enzyme:: Analysis of key glycolytic and oxidative pentose-phosphate pathway enzymes in the cyanobacterium Synechocystis sp PCC 6803 [J].
Knowles, VL ;
Plaxton, WC .
PLANT AND CELL PHYSIOLOGY, 2003, 44 (07) :758-763
[23]   CHARACTERIZATION OF ATP-DEPENDENT FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE ISOZYMES FROM LEAF AND ENDOSPERM TISSUES OF RICINUS-COMMUNIS [J].
KNOWLES, VL ;
GREYSON, MF ;
DENNIS, DT .
PLANT PHYSIOLOGY, 1990, 92 (01) :155-159
[24]   On the Role and Production of Polyhydroxybutyrate (PHB) in the Cyanobacterium Synechocystis sp. PCC 6803 [J].
Koch, Moritz ;
Berendzen, Kenneth W. ;
Forchhammer, Karl .
LIFE-BASEL, 2020, 10 (04)
[25]   CHLOROPLAST PHOSPHOFRUCTOKINASE IN THE GREEN-ALGA, DUNALIELLA-MARINA - PARTIAL-PURIFICATION AND KINETIC AND REGULATORY PROPERTIES [J].
KOMBRINK, E ;
WOBER, G .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1982, 213 (02) :602-619
[26]   An improved general amino acid replacement matrix [J].
Le, Si Quang ;
Gascuel, Olivier .
MOLECULAR BIOLOGY AND EVOLUTION, 2008, 25 (07) :1307-1320
[27]   Identification of allosteric sites in rabbit phosphofructo-1-kinase [J].
Li, YL ;
Rivera, D ;
Ru, W ;
Gunasekera, D ;
Kemp, RG .
BIOCHEMISTRY, 1999, 38 (49) :16407-16412
[28]   Glycolytic Shunts Replenish the Calvin-Benson-Bassham Cycle as Anaplerotic Reactions in Cyanobacteria [J].
Makowka, Alexander ;
Nichelmann, Lars ;
Schulze, Dennis ;
Spengler, Katharina ;
Wittmann, Christoph ;
Forchhammer, Karl ;
Gutekunst, Kirstin .
MOLECULAR PLANT, 2020, 13 (03) :471-482
[29]   The Crystal Structure of ATP-bound Phosphofructokinase from Trypanosoma brucei Reveals Conformational Transitions Different from those of Other Phosphofructokinases [J].
McNae, Iain W. ;
Martinez-Oyanedel, Jose ;
Keillor, Jeffrey W. ;
Michels, Paul A. M. ;
Fothergill-Gilmore, Linda A. ;
Walkinshaw, Malcolm D. .
JOURNAL OF MOLECULAR BIOLOGY, 2009, 385 (05) :1519-1533
[30]   ColabFold: making protein folding accessible to all [J].
Mirdita, Milot ;
Schutze, Konstantin ;
Moriwaki, Yoshitaka ;
Heo, Lim ;
Ovchinnikov, Sergey ;
Steinegger, Martin .
NATURE METHODS, 2022, 19 (06) :679-+