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Lipids balance as a spectroscopy marker of diabetes. Analysis of FTIR spectra by 2D correlation and machine learning analyses
被引:1
|作者:
Kryska, Adrianna
[1
]
Depciuch, Joanna
[2
,3
]
Krysa, Mikolaj
[1
]
Paja, Wieslaw
[4
]
Wosiak, Agnieszka
[5
]
Budzynska, Barbara
[7
]
Sroka-Bartnicka, Anna
[1
]
Nicos, Marcin
[6
]
机构:
[1] Med Univ Lublin, Fac Biomed Sci, Independent Unit Spect & Chem Imaging, Chodzki 4a, PL-20093 Lublin, Poland
[2] Polish Acad Sci, Inst Nucl Phys, Walerego Eljasza Radzikowskiego 152, PL-31342 Krakow, Poland
[3] Med Univ Lublin, Dept Biochem & Mol Biol, Chodzki 1, PL-20093 Lublin, Poland
[4] Univ Rzeszow, Inst Comp Sci, Pigon 1, PL-35310 Rzeszow, Poland
[5] Lodz Univ Technol, Inst Informat Technol, Al Politechn 8, PL-93590 Lodz, Poland
[6] Med Univ Lublin, Dept Pneumonol Oncol & Allergol, Jaczewskiego 8, PL-20090 Lublin, Poland
[7] Med Univ Lublin, Fac Biomed Sci, Independent Lab Behav Studies, Chodzki 4A, PL-20093 Lublin, Poland
关键词:
Diabetes;
Animal model;
Lipids;
Multivariate analysis;
FTIR;
Machine learning;
FEATURE-SELECTION METHODS;
MELLITUS;
RISK;
D O I:
10.1016/j.saa.2024.124653
中图分类号:
O433 [光谱学];
学科分类号:
0703 ;
070302 ;
摘要:
The number of people suffering from type 2 diabetes has rapidly increased. Taking into account, that elevated intracellular lipid concentrations, as well as their metabolism, are correlated with diminished insulin sensitivity, in this study we would like to show lipids spectroscopy markers of diabetes. For this purpose, serum collected from rats (animal model of diabetes) was analyzed using Fourier Transformed Infrared-Attenuated Total Reflection (FTIR-ATR) spectroscopy. Analyzed spectra showed that rats with diabetes presented higher concentration of phospholipids and cholesterol in comparison with non-diabetic rats. Moreover, the analysis of second (IInd) derivative spectra showed no structural changes in lipids. Machine learning methods showed higher accuracy for IInd derivative spectra (from 65 % to 89 %) than for absorbance FTIR spectra (53-65 %). Moreover, it was possible to identify significant wavelength intervals from IInd derivative spectra using random forest-based feature selection algorithm, which further increased the accuracy of the classification (up to 92 % for phospholipid region). Moreover decision tree based on the selected features showed, that peaks at 1016 cm(-1) and 2936 cm(-1) can be good candidates of lipids marker of diabetes.
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