Application of ACO algorithm in protein structure prediction

被引:0
|
作者
Tang, Hao-Xuan [1 ]
Qu, Yi [1 ]
机构
[1] School of Computer Science and Technology, Harbin Institute of Technology, Harbin 150001, China
关键词
Crystal lattices - Artificial intelligence - Bioinformatics - Forecasting;
D O I
暂无
中图分类号
学科分类号
摘要
The hydrophobic-polar (HP) lattice model is an important simplified model for studying protein folding. In this paper, we present an improved ACO algorithm for the protein structure prediction. In the algorithm, the lone ethod is applied to deal with the infeasible structures, and the oint mutation and reconstruction ethod is applied in local search phase. The empirical results show that the presented method is feasible and effective to solve the problem of protein structure prediction, and notable improvements in CPU time are obtained.
引用
收藏
页码:111 / 114
相关论文
共 50 条
  • [31] A multiple minima genetic algorithm for protein structure prediction
    Custodio, Fabio Lima
    Barbosa, Helio J. C.
    Dardenne, Laurent Emmanuel
    APPLIED SOFT COMPUTING, 2014, 15 : 88 - 99
  • [32] An immune algorithm for protein structure prediction on lattice models
    Cutello, Vincenzo
    Nicosia, Giuseppe
    Pavone, Mario
    Timmis, Jonathan
    IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, 2007, 11 (01) : 101 - 117
  • [34] Application of Isomap Method in Prediction of Protein Quaternary Structure
    Wang, Tong
    Wang, Jian
    Hu, Lihua
    INFORMATION TECHNOLOGY FOR MANUFACTURING SYSTEMS II, PTS 1-3, 2011, 58-60 : 840 - +
  • [35] Rapid knot detection and application to protein structure prediction
    Khatib, Firas
    Weirauch, Matthew T.
    Rohl, Carol A.
    BIOINFORMATICS, 2006, 22 (14) : E252 - E259
  • [36] Application of improved TOPSIS method based on ACO and BP algorithm
    Niu, Dongxiao
    Lv, Jialiang
    2008 7TH WORLD CONGRESS ON INTELLIGENT CONTROL AND AUTOMATION, VOLS 1-23, 2008, : 6183 - 6186
  • [37] Interactive ACO Algorithm toward Practical IEC Application Fields
    Tanabe, Ryoji
    Gonsalves, Tad
    Itoh, Kiyoshi
    ADVANCED METHODS, TECHNIQUES, AND APPLICATIONS IN MODELING AND SIMULATION, 2012, 4 : 308 - 315
  • [38] GSAFold: A new application of GSA to protein structure prediction
    Melo, Marcelo C. R.
    Bernardi, Rafael C.
    Fernandes, Tacio V. A.
    Pascutti, Pedro G.
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2012, 80 (09) : 2305 - 2310
  • [39] ACO-AFSA Algorithm in Function Optimization and Its Application
    Wang, Shi Gang
    Jiang, Yu Chao
    Wang, Feng Juan
    Jiang, Shu Feng
    2016 INTERNATIONAL CONFERENCE ON MECHATRONICS, MANUFACTURING AND MATERIALS ENGINEERING (MMME 2016), 2016, 63
  • [40] Edge histogram based sampling algorithm and its application to ACO
    Tsutsui, S
    PROCEEDINGS OF THE 7TH JOINT CONFERENCE ON INFORMATION SCIENCES, 2003, : 283 - 286