Application of ACO algorithm in protein structure prediction

被引:0
|
作者
Tang, Hao-Xuan [1 ]
Qu, Yi [1 ]
机构
[1] School of Computer Science and Technology, Harbin Institute of Technology, Harbin 150001, China
关键词
Crystal lattices - Artificial intelligence - Bioinformatics - Forecasting;
D O I
暂无
中图分类号
学科分类号
摘要
The hydrophobic-polar (HP) lattice model is an important simplified model for studying protein folding. In this paper, we present an improved ACO algorithm for the protein structure prediction. In the algorithm, the lone ethod is applied to deal with the infeasible structures, and the oint mutation and reconstruction ethod is applied in local search phase. The empirical results show that the presented method is feasible and effective to solve the problem of protein structure prediction, and notable improvements in CPU time are obtained.
引用
收藏
页码:111 / 114
相关论文
共 50 条
  • [1] Application of ACO algorithm in protein structure prediction
    唐好选
    曲毅
    Journal of Harbin Institute of Technology, 2009, 16 (01) : 111 - 114
  • [2] Application of ACO algorithm in protein structure prediction
    唐好选
    曲毅
    Journal of Harbin Institute of Technology(New series), 2009, (01) : 111 - 114
  • [3] Application of PBIL algorithm to prediction of protein secondary structure
    Jin, BY
    Qu, YT
    Ma, YJ
    Luo, HB
    Proceedings of 2005 International Conference on Machine Learning and Cybernetics, Vols 1-9, 2005, : 3340 - 3345
  • [4] The Application of Artificial Bee Colony Algorithm in Protein Structure Prediction
    Li, Yanzhang
    Zhou, Changjun
    Zheng, Xuedong
    BIO-INSPIRED COMPUTING - THEORIES AND APPLICATIONS, BIC-TA 2014, 2014, 472 : 255 - 258
  • [5] An improved simulated annealing algorithm and its application to protein structure prediction
    Guo, Chonghui
    Zhu, Ping
    Tang, Huanwen
    Lu, Mingyu
    WCICA 2006: SIXTH WORLD CONGRESS ON INTELLIGENT CONTROL AND AUTOMATION, VOLS 1-12, CONFERENCE PROCEEDINGS, 2006, : 280 - 280
  • [6] Cuckoo Search Algorithm and Its Application for Secondary Protein Structure Prediction
    Rakhshani, Hojjat
    Rahati, Amin
    Dehghanian, Effat
    2015 2ND INTERNATIONAL CONFERENCE ON KNOWLEDGE-BASED ENGINEERING AND INNOVATION (KBEI), 2015, : 411 - 416
  • [7] Improvement of simulated annealing algorithm and its application to protein structure prediction
    Jin, Li-Xia
    Tang, Huan-Wen
    Xitong Gongcheng Lilun yu Shijian/System Engineering Theory and Practice, 2002, 22 (09): : 92 - 96
  • [8] Application of Optimization Analysis on Structure Damage Identification Based on ACO Algorithm
    Hu, Mingyi
    Zhang, Lingxin
    ADVANCED DESIGN AND MANUFACTURE III, 2011, 450 : 506 - 509
  • [9] A Hybrid Algorithm for Protein Structure Prediction
    Zhou, Changjun
    Jiao, Yingying
    Zhang, Qiang
    Wang, Bin
    Wei, Xiaopeng
    JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2013, 10 (11) : 2701 - 2707
  • [10] Evolutionary Algorithm for Protein Structure Prediction
    Kehyayan, Christine
    Mansour, Nashat
    Khachfe, Hassan
    2008 INTERNATIONAL CONFERENCE ON ADVANCED COMPUTER THEORY AND ENGINEERING, 2008, : 925 - +