Concomitant Group Testing

被引:0
|
作者
Bui, Thach V. [1 ,2 ]
Scarlett, Jonathan [3 ,4 ]
机构
[1] Natl Univ Singapore, Dept Comp Sci, Singapore 117417, Singapore
[2] Natl Univ Singapore, Fac Engn, Singapore 117575, Singapore
[3] Natl Univ Singapore, Dept Math, Dept Comp Sci, Singapore 117417, Singapore
[4] Natl Univ Singapore, Inst Data Sci, Singapore 117417, Singapore
基金
新加坡国家研究基金会;
关键词
Testing; Drugs; Standards; Diseases; Decoding; Chemicals; Upper bound; Group testing; sparsity; discrete algorithms; information-theoretic bounds; NONADAPTIVE ALGORITHMS; DEFECTIVE MEMBERS; POOLING DESIGNS;
D O I
10.1109/TIT.2024.3392239
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
In this paper, we introduce a variation of the group testing problem capturing the idea that a positive test requires a combination of multiple "types" of items. Specifically, we assume that there are multiple disjoint semi-defective sets, and a test is positive if and only if it contains at least one item from each of these sets. The goal is to reliably identify all of the semi-defective sets using as few tests as possible, and we refer to this problem as Concomitant Group Testing (ConcGT). We derive a variety of algorithms for this task, focusing primarily on the case that there are two semi-defective sets. Our algorithms are distinguished by (i) whether they are deterministic (zero-error) or randomized (small-error), and (ii) whether they are non-adaptive, fully adaptive, or have limited adaptivity (namely, 2 or 3 stages). Both our deterministic adaptive algorithm and our randomized algorithms (non-adaptive or limited adaptivity) are order-optimal in broad scaling regimes of interest, and improve significantly over baseline results that are based on solving a more general problem as an intermediate step (e.g., hypergraph learning).
引用
收藏
页码:7179 / 7192
页数:14
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