Concomitant Group Testing

被引:0
|
作者
Bui, Thach V. [1 ,2 ]
Scarlett, Jonathan [3 ,4 ]
机构
[1] Natl Univ Singapore, Dept Comp Sci, Singapore 117417, Singapore
[2] Natl Univ Singapore, Fac Engn, Singapore 117575, Singapore
[3] Natl Univ Singapore, Dept Math, Dept Comp Sci, Singapore 117417, Singapore
[4] Natl Univ Singapore, Inst Data Sci, Singapore 117417, Singapore
基金
新加坡国家研究基金会;
关键词
Testing; Drugs; Standards; Diseases; Decoding; Chemicals; Upper bound; Group testing; sparsity; discrete algorithms; information-theoretic bounds; NONADAPTIVE ALGORITHMS; DEFECTIVE MEMBERS; POOLING DESIGNS;
D O I
10.1109/TIT.2024.3392239
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
In this paper, we introduce a variation of the group testing problem capturing the idea that a positive test requires a combination of multiple "types" of items. Specifically, we assume that there are multiple disjoint semi-defective sets, and a test is positive if and only if it contains at least one item from each of these sets. The goal is to reliably identify all of the semi-defective sets using as few tests as possible, and we refer to this problem as Concomitant Group Testing (ConcGT). We derive a variety of algorithms for this task, focusing primarily on the case that there are two semi-defective sets. Our algorithms are distinguished by (i) whether they are deterministic (zero-error) or randomized (small-error), and (ii) whether they are non-adaptive, fully adaptive, or have limited adaptivity (namely, 2 or 3 stages). Both our deterministic adaptive algorithm and our randomized algorithms (non-adaptive or limited adaptivity) are order-optimal in broad scaling regimes of interest, and improve significantly over baseline results that are based on solving a more general problem as an intermediate step (e.g., hypergraph learning).
引用
收藏
页码:7179 / 7192
页数:14
相关论文
共 50 条
  • [1] Generalized Group Testing
    Cheng, Xiwei
    Jaggi, Sidharth
    Zhou, Qiaoqiao
    IEEE TRANSACTIONS ON INFORMATION THEORY, 2023, 69 (03) : 1413 - 1451
  • [2] Noisy Adaptive Group Testing via Noisy Binary Search
    Teo, Bernard
    Scarlett, Jonathan
    IEEE TRANSACTIONS ON INFORMATION THEORY, 2022, 68 (05) : 3340 - 3353
  • [3] Tropical Group Testing
    Wang, Hsin-Po
    Gabrys, Ryan
    Vardy, Alexander
    IEEE TRANSACTIONS ON INFORMATION THEORY, 2023, 69 (09) : 6098 - 6120
  • [4] Performance Bounds for Group Testing With Doubly-Regular Designs
    Tan, Nelvin
    Tan, Way
    Scarlett, Jonathan
    IEEE TRANSACTIONS ON INFORMATION THEORY, 2023, 69 (02) : 1224 - 1243
  • [5] Sublinear-Time Non-Adaptive Group Testing With O(k log n) Tests via Bit-Mixing Coding
    Bondorf, Steffen
    Chen, Binbin
    Scarlett, Jonathan
    Yu, Haifeng
    Zhao, Yuda
    IEEE TRANSACTIONS ON INFORMATION THEORY, 2021, 67 (03) : 1559 - 1570
  • [6] Bounds for the Number of Tests in Non-adaptive Randomized Algorithms for Group Testing
    Bshouty, Nader H.
    Haddad, George
    Haddad-Zaknoon, Catherine A.
    SOFSEM 2020: THEORY AND PRACTICE OF COMPUTER SCIENCE, 2020, 12011 : 101 - 112
  • [7] Noisy Non-Adaptive Group Testing: A (Near-)Definite Defectives Approach
    Scarlett, Jonathan
    Johnson, Oliver
    IEEE TRANSACTIONS ON INFORMATION THEORY, 2020, 66 (06) : 3775 - 3797
  • [8] Small Error Algorithms for Tropical Group Testing
    Paligadu, Vivekanand
    Johnson, Oliver
    Aldridge, Matthew
    IEEE TRANSACTIONS ON INFORMATION THEORY, 2024, 70 (10) : 7232 - 7250
  • [9] Noisy Adaptive Group Testing: Bounds and Algorithms
    Scarlett, Jonathan
    IEEE TRANSACTIONS ON INFORMATION THEORY, 2019, 65 (06) : 3646 - 3661
  • [10] A survey on nonadaptive group testing algorithms through the angle of decoding
    Chen, Hong-Bin
    Hwang, Frank K.
    JOURNAL OF COMBINATORIAL OPTIMIZATION, 2008, 15 (01) : 49 - 59