Detection of SARS-CoV-2 by using real-time PCR nasopharyngeal swabs in suspected patients and their clinical medication

被引:1
作者
Mazhar M.W. [1 ]
Raza A. [2 ]
shaheen T. [1 ]
Zubair M. [1 ]
Mahmood J. [1 ]
Tahir H. [3 ]
Saif S. [1 ]
Mazhar F. [4 ]
机构
[1] Department of Bioinformatics and Biotechnology, Government College University, Faisalabad
[2] Department of Biological Sciences, Nuclear Institute for Agriculture & Biology, Faisalabad
[3] University of Health Sciences, Lahore
[4] Department of Microbiology, Muhammad Nawaz Sharif University of Agriculture, Multan
来源
Sensors International | 2022年 / 3卷
关键词
CBP (Complete blood picture); Covid-19; CRP (c reactive protein); ESR (Erythrocyte sedimentation rate); HDL (High density lipid); LDH (Lactate dehydrogenase); SARS-CoV-2; TG (Triglyceride);
D O I
10.1016/j.sintl.2021.100148
中图分类号
学科分类号
摘要
Background: The corona name derived from their crown like spike proteins attach with cell receptors. It belongs to coronaviradae family and nideovirales order, envelop virus, size range 65–125 ​nm and positive single standard RNA between 26.4 and 31.7 ​kb and contain 7096 amino acid. There are four subtypes that have been detected these are alpha, beta, gamma and delta. Methodology: The 267 covid-19 blood and nasopharyngeal samples were collected from Multan region. RNA extraction from nasopharyngeal samples and run the PCR. The blood samples use for clinical tests, Lactate dehydrogenase, serum ferritin level, D-Dimer, TG, cholesterol, thyphoidot, HDL, lymphocyte count and CRP. Results: 127 (47.21%) out of 267 patients were covid-19 PCR positive and showed the amplification of ORF1ab, E, and N gene, while 140 individuals were covid-19 PCR negative and not showed the amplification of ORF1ab, E and N gene. The patients with negative Covid-19 PCR, the other analysis tests such as lactate dehydrogenase, HDL, ferritin, ESR, CBP, D-Dimer, Tg, cholesterol, CRP and CT scan. The patients effected covid-19 have higher values of D-Dimer, ESR, Neutrophils, LDH, CRP and ferritin level than normal ranges. However, the values of HDL, cholesterol and lymphocytes were decreased from the normal range. © 2021 The Authors
引用
收藏
相关论文
共 8 条
  • [1] Sohrabi C., Et al., World Health Organization declares global emergency: a review of the 2019 novel coronavirus (COVID-19), Int. J. Surg., 76, pp. 71-76, (2020)
  • [2] Mazhar M.W., Et al., Severe acute respiratory syndrome (Saras Covid-2): a comprehensive review, Quant. J. Med. Health Sci., 1, 4, pp. 25-33, (2021)
  • [3] Li F., Structure, function, and evolution of coronavirus spike proteins, Annu. Rev. Virol., 3, pp. 237-261, (2016)
  • [4] Guo Y.-R., Et al., The origin, transmission and clinical therapies on coronavirus disease 2019 (COVID-19) outbreak–an update on the status, Mil. Med. Res., 7, 1, pp. 1-10, (2020)
  • [5] Shahzad F., Anderson D., Najafzadeh M., The antiviral, anti-inflammatory effects of natural medicinal herbs and mushrooms and SARS-CoV-2 infection, Nutrients, 12, 9, (2020)
  • [6] de Albuquerque L.P., Et al., Coronavirus spike (S) protein: a brief review on structure-function relationship, host receptors, and role in Cell infection, Adv. Res., pp. 116-124, (2020)
  • [7] Olaleye O.A., Kaur M., Onyenaka C.C., Ambroxol hydrochloride inhibits the interaction between severe acute respiratory syndrome Coronavirus 2 spike protein's receptor binding domain and recombinant human ACE2, BioRxiv, (2020)
  • [8] Soy M., Et al., Cytokine storm in COVID-19: pathogenesis and overview of anti-inflammatory agents used in treatment, Clin. Rheumatol., 39, pp. 2085-2094, (2020)