RNA secondary structure prediction based on binary-coded centroid bat algorithm

被引：0
作者：
Cao, Yang [1 ]
Cui, Zhihua [1 ,2 ]
机构：
[1] Complex System and Computational Intelligence Laboratory, Taiyuan University of Science and Technology, Shanxi
[2] State Key Laboratory for Novel Software Technology, Nanjing University, Jiangsu
来源：
Journal of Bionanoscience | 2014年 / 8卷 / 05期
基金：
中国国家自然科学基金;
关键词：
Bat algorithm; Centroid strategy; RNA secondary structure;
D O I：
10.1166/jbns.2014.1256
中图分类号：
学科分类号：
摘要：
RNA secondary structure prediction is a key issue for computational biology, and may meta-heuristic algorithms are applied to solve it. In this paper, a new variant of bat algorithm, binary-coded centroid bat algorithm, is designed, with this manner, one centroid strategy is employed to increase the local search capablity. To test the performance, it is applied to solve the prediction of RNA secondary structure problem. Simulation results show it is validity. Copyright © 2014 American Scientific Publishers.
引用
收藏
页码：364 / 367
页数：3
相关论文
共 50 条
  • [31] Statistical and Bayesian approaches to RNA secondary structure prediction
    Ding, Y
    RNA, 2006, 12 (03) : 323 - 331
  • [32] RNA Secondary Structure Prediction Algorithms Including Pseudoknots
    Sharma, Dolly
    Singh, Shailendra
    Chand, Trilok
    CURRENT BIOINFORMATICS, 2014, 9 (03) : 268 - 283
  • [33] Limits of experimental evidence in RNA secondary structure prediction
    von Loehneysen, Sarah
    Moerl, Mario
    Stadler, Peter F.
    FRONTIERS IN BIOINFORMATICS, 2024, 4
  • [34] The construction of RNA secondary structure prediction system.
    Li, WJ
    Wu, JJ
    PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 1996, 23 (05) : 449 - 453
  • [35] An efficient three-Level parallel ABC algorithm for secondary structure prediction of complex RNA sequences
    Lalwani, Soniya
    Kumar, Rajesh
    APPLIED SOFT COMPUTING, 2021, 99 (99)
  • [36] Simultaneous Prediction of RNA Secondary Structure and Helix Coaxial Stacking
    Shareghi, Pooya
    Wang, Yingfeng
    Malmberg, Russell
    Cai, Liming
    2011 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM 2011), 2011, : 89 - 95
  • [37] Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
    Akutsu, T
    DISCRETE APPLIED MATHEMATICS, 2000, 104 (1-3) : 45 - 62
  • [38] A Comparative Taxonomy of Parallel Algorithms for RNA Secondary Structure Prediction
    Al-Khatib, Ra'ed M.
    Abdullah, Rosni
    Rashid, Nur'Aini Abdul
    EVOLUTIONARY BIOINFORMATICS, 2010, 6 : 27 - 45
  • [39] Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction
    Flamm, Christoph
    Wielach, Julia
    Wolfinger, Michael T.
    Badelt, Stefan
    Lorenz, Ronny
    Hofacker, Ivo L.
    FRONTIERS IN BIOINFORMATICS, 2022, 2
  • [40] The Stock Index Prediction Based on SVR Model with Bat Optimization Algorithm
    Zheng, Jianguo
    Wang, Yilin
    Li, Shihan
    Chen, Hancong
    ALGORITHMS, 2021, 14 (10)
12345