Optimal multiple parsimony alignment with affine gap cost using a phylogenetic tree

被引：0
|
作者：
Knudsen, Bjarne [1 ]
机构：
[1] Department of Zoology, University of Florida, Gainesville, FL 32611-8525, United States
来源：
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) | 2003年 / 2812卷
关键词：
D O I：
10.1007/978-3-540-39763-2_31
中图分类号：
学科分类号：
摘要：
13
引用
收藏
页码：433 / 446
相关论文
共 50 条
  • [41] Efficiently resolving the basal clades of a phylogenetic tree using Bayesian and parsimony approaches: A case study using mitogenomic data from 100 higher teleost fishes
    Simmons, MP
    Miya, M
    CLADISTICS, 2004, 20 (01) : 96 - 97
  • [42] HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing
    Shixiang Wan
    Quan Zou
    Algorithms for Molecular Biology, 12
  • [43] HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing
    Wan, Shixiang
    Zou, Quan
    ALGORITHMS FOR MOLECULAR BIOLOGY, 2017, 12
  • [44] Testing for unequal amounts of evolution in a continuous character on different branches of a phylogenetic tree using linear and squared-change parsimony: An example using lesser antillean Anolis lizards
    Butler, MA
    Losos, JB
    EVOLUTION, 1997, 51 (05) : 1623 - 1635
  • [45] Multiple sequence alignment and phylogenetic analysis of wheat pathogens using conserved genes for identification and development of diagnostic markers
    Gupta, Sangeeta
    Aggarwal, Rashmi
    Sharma, Sapna
    Gurjar, Malkhan S.
    Bashyal, Bishnu M.
    Saharan, Mahender S.
    Agarwal, Shweta
    CEREAL RESEARCH COMMUNICATIONS, 2022, 50 (03) : 463 - 472
  • [46] Multiple sequence alignment and phylogenetic analysis of wheat pathogens using conserved genes for identification and development of diagnostic markers
    Sangeeta Gupta
    Rashmi Aggarwal
    Sapna Sharma
    Malkhan S. Gurjar
    Bishnu M. Bashyal
    Mahender S. Saharan
    Shweta Agarwal
    Cereal Research Communications, 2022, 50 : 463 - 472
  • [47] Optimal sum-of-pairs multiple sequence alignment using incremental Carrillo and Lipman bounds
    Konagurthu, Arun S.
    Stuckey, Peter J.
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2006, 13 (03) : 668 - 685
  • [48] Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation
    Li, XY
    He, ZL
    Zhou, JZ
    NUCLEIC ACIDS RESEARCH, 2005, 33 (19) : 6114 - 6123
  • [49] Sample-Align-D: A high performance multiple sequence alignment system using phylogenetic sampling and domain decomposition
    Saeed, Fahad
    Khohhar, Ashfaq
    2008 IEEE INTERNATIONAL SYMPOSIUM ON PARALLEL & DISTRIBUTED PROCESSING, VOLS 1-8, 2008, : 488 - 496
  • [50] Using multiple plastid DNA regions to construct the first phylogenetic tree for Asian genera of Coffeeae (Ixoroideae, Rubiaceae)
    Arriola, Axel H.
    Davis, Aaron P.
    Davies, Nina M. J.
    Meve, Ulrich
    Liede-Schumann, Sigrid
    Alejandro, Grecebio Jonathan D.
    BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2018, 188 (02) : 132 - 143
12345