Local and Global Stratification Analysis in Whole Genome Sequencing (WGS) Studies Using LocStra

被引:0
|
作者
Hahn, Georg [1 ]
Lutz, Sharon Marie [1 ]
Hecker, Julian [2 ]
Prokopenko, Dmitry [3 ]
Lange, Christoph [1 ]
机构
[1] Department of Biostatistics, T.H. Chan School of Public Health, Harvard University, Boston,MA,02115, United States
[2] Department of Medicine, Channing Laboratory, Brigham and Women’s Hospital, Boston,MA,02115, United States
[3] Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston,MA,02115, United States
来源
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) | 2020年 / 12029 LNBI卷
关键词
Global population - Global similarity - Local similarity - Population stratification - Relationship matrix - Similarity matrix - Sliding Window - Whole genome sequencing;
D O I
暂无
中图分类号
学科分类号
摘要
18
引用
收藏
页码:159 / 170
相关论文
共 50 条
  • [21] Benchmarking of Whole Genome Sequencing (WGS) and Whole Transcriptome Sequencing (WTS) As Diagnostic Tools for Determining the Mutation Status of IGHV Genes in CLL
    Mueller, Heiko
    Walter, Wencke
    Hutter, Stephan
    Nadarajah, Niroshan
    Dicker, Frank
    Meggendorfer, Manja
    Kern, Wolfgang
    Haferlach, Torsten
    Haferlach, Claudia
    BLOOD, 2022, 140 : 7826 - 7827
  • [22] Analysis of the bread wheat genome using whole-genome shotgun sequencing
    Rachel Brenchley
    Manuel Spannagl
    Matthias Pfeifer
    Gary L. A. Barker
    Rosalinda D’Amore
    Alexandra M. Allen
    Neil McKenzie
    Melissa Kramer
    Arnaud Kerhornou
    Dan Bolser
    Suzanne Kay
    Darren Waite
    Martin Trick
    Ian Bancroft
    Yong Gu
    Naxin Huo
    Ming-Cheng Luo
    Sunish Sehgal
    Bikram Gill
    Sharyar Kianian
    Olin Anderson
    Paul Kersey
    Jan Dvorak
    W. Richard McCombie
    Anthony Hall
    Klaus F. X. Mayer
    Keith J. Edwards
    Michael W. Bevan
    Neil Hall
    Nature, 2012, 491 : 705 - 710
  • [23] Using Whole Genome Sequencing for Digital Analysis of Tumour Evolution
    Mardis, E.
    EUROPEAN JOURNAL OF CANCER, 2012, 48 : S2 - S2
  • [24] Comparison of different copy number variations (CNVs) detection tools using whole-genome sequencing (WGS) data
    Rodriguez Hidalgo, Maria
    Miranda, Jose I.
    Lara-Lopez, Araceli
    Reparaz-Bonilla, Iraia
    Irigoyen, Cristina
    Ruiz-Ederra, Javier
    Maynou, Joan
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2023, 31 : 294 - 294
  • [25] Whole Genome Sequencing Analysis of Gastroparesis
    Smieszek, Sandra P.
    Carlin, Jesse L.
    Birznieks, Gunther
    Polymeropoulos, Mihael H.
    AMERICAN JOURNAL OF GASTROENTEROLOGY, 2019, 114 : S280 - S281
  • [26] Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases
    Jajou, Rana
    Kohl, Thomas A.
    Walker, Timothy
    Norman, Anders
    Cirillo, Daniela Maria
    Tagliani, Elisa
    Niemann, Stefan
    de Neeling, Albert
    Lillebaek, Troels
    Anthony, Richard M.
    van Soolingen, Dick
    EUROSURVEILLANCE, 2019, 24 (50): : 8 - 17
  • [27] WHOLE GENOME SEQUENCING ANALYSIS OF GASTROPARESIS
    Smieszek, Sandra P.
    Carlin, Jesse L.
    GASTROENTEROLOGY, 2020, 158 (06) : S622 - S622
  • [28] Cell-based noninvasive prenatal test (cbNIPT) using whole-genome sequencing (WGS-cbNIPT)
    Laursen, Maria Bach
    Lauridsen, Maibritt Norgaard
    Ravn, Katarina
    Jeppesen, Line Dahl
    Bruun, Anne-Marie
    Singh, Ripudaman
    Pedersen, Lars Henning
    Vogel, Ida
    Hatt, Lotte
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 1314 - 1314
  • [29] Rapid Whole Genome Sequencing (WGS) in Diagnosing the Etiology of Refractory Pulmonary Hypertension of the Newborn (PPHN)
    Sharahil, N. Ba
    Tavberidze, N.
    Zapata, H.
    Bockoven, C. G.
    Balasubramaniam, V.
    AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2024, 209
  • [30] Meeting summary: ethical aspects of whole exome and whole genome sequencing studies (WES/WGS) in rare diseases, Tel Aviv, Israel, January 2013
    Farberov, Luba
    Gilam, Avital
    Isakov, Ofer
    Shomron, Noam
    GENETICS RESEARCH, 2013, 95 (2-3) : 53 - 56