Complete chloroplast genome of Sagina maxima A. Gray (Caryophyllaceae) from Ulleung-do Island, Korea

被引:0
作者
Tamboli, Asif S. [1 ]
Kadam, Suhas K. [1 ]
Youn, Jin-Suk [1 ]
Yang, Jiyoung [1 ]
Sim, Young Seok [2 ]
Pak, Jae Hong [1 ]
Choo, Yeon-Sik [1 ,2 ]
机构
[1] Kyungpook Natl Univ, Res Inst Dok Do & Ulleung Do Isl, Daegu, South Korea
[2] Kyungpook Natl Univ, Sch Life Sci, Dept Biol, Daegu, South Korea
基金
新加坡国家研究基金会;
关键词
Caryophyllaceae; chloroplast genome; Sagina maxima; Ulleung-do Island; SEQUENCE;
D O I
10.1080/26895293.2024.2402861
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Sagina maxima is an annual herb distributed in East Asia and North America. In this study, we sequenced and characterized the chloroplast genome (cp.) of S. maxima. The complete cp. genome of S. maxima is 151,507 bp long and comprises a large single-copy (LSC) region (83,669 bp), a small single-copy (SSC) region (17,220 bp), and a pair of inverted repeats (IRs) (25,309 bp) with 36.6% GC content. A unique set of 112 genes were identified which includes 78 protein-coding genes, 30 tRNA and 4 rRNA. Total 18 genes were duplicated within the IR regions and 16 genes have one intron and only clpP gene with two introns. LSC/IR junction located in the rps19 while SSC/IR junction located in ycf1. The average number of codon usage is 26,080 for all protein-coding genes in the cp. genome. There were 26 long repeats and 40 simple sequence repeats in the cp. genome, which were mostly, located in intergenic spacer (IGS) regions. This study provides the first brief characterization report of the cp. genome from the genus Sagina, which will be useful in future investigations into the genetic resources, species identification, and phylogeny of Sagina.
引用
收藏
页数:7
相关论文
共 23 条
  • [21] GeSeq - versatile and accurate annotation of organelle genomes
    Tillich, Michael
    Lehwark, Pascal
    Pellizzer, Tommaso
    Ulbricht-Jones, Elena S.
    Fischer, Axel
    Bock, Ralph
    Greiner, Stephan
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) : W6 - W11
  • [22] Walters S.M., 1993, Flora europaea, V1, P176
  • [23] The First Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Pistachio (Pistacia vera)
    Zarei, Abdolkarim
    Ebrahimi, Aziz
    Mathur, Samarth
    Lawson, Shaneka
    [J]. DIVERSITY-BASEL, 2022, 14 (07):