Understanding Higher-Order Interactions in Information Space

被引:0
|
作者
Edelsbrunner, Herbert [1 ]
Oelsboeck, Katharina [1 ]
Wagner, Hubert [2 ]
机构
[1] ISTA Inst Sci & Technol Austria, A-3400 Klosterneuburg, Austria
[2] Univ Florida, Dept Math, Gainesville, FL 32611 USA
基金
欧洲研究理事会; 奥地利科学基金会;
关键词
higher-order interactions; topological data analysis; persistent homology; simplicial complex; alpha shape; wrap complex; information theory; Shannon entropy; relative entropy; Bregman divergence; non-Euclidean geometry; Bregman geometry;
D O I
10.3390/e26080637
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Methods used in topological data analysis naturally capture higher-order interactions in point cloud data embedded in a metric space. This methodology was recently extended to data living in an information space, by which we mean a space measured with an information theoretical distance. One such setting is a finite collection of discrete probability distributions embedded in the probability simplex measured with the relative entropy (Kullback-Leibler divergence). More generally, one can work with a Bregman divergence parameterized by a different notion of entropy. While theoretical algorithms exist for this setup, there is a paucity of implementations for exploring and comparing geometric-topological properties of various information spaces. The interest of this work is therefore twofold. First, we propose the first robust algorithms and software for geometric and topological data analysis in information space. Perhaps surprisingly, despite working with Bregman divergences, our design reuses robust libraries for the Euclidean case. Second, using the new software, we take the first steps towards understanding the geometric-topological structure of these spaces. In particular, we compare them with the more familiar spaces equipped with the Euclidean and Fisher metrics.
引用
收藏
页数:22
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