TAG-SPARK: Empowering High-Speed Volumetric Imaging With Deep Learning and Spatial Redundancy

被引:0
作者
Hsieh, Yin-Tzu [1 ]
Jhan, Kai-Chun [2 ]
Lee, Jye-Chang [3 ]
Huang, Guan-Jie [4 ]
Chung, Chang-Ling [4 ]
Chen, Wun-Ci [2 ]
Chang, Ting-Chen [4 ]
Chen, Bi-Chang [5 ]
Pan, Ming-Kai [3 ,6 ,7 ,8 ,9 ,10 ]
Wu, Shun-Chi [2 ,8 ]
Chu, Shi-Wei [3 ,4 ,8 ]
机构
[1] Natl Taiwan Univ, Grad Inst Elect Engn, Taipei 10617, Taiwan
[2] Natl Tsing Hua Univ, Dept Engn & Syst Sci, Hsinchu 30013, Taiwan
[3] Natl Taiwan Univ, Mol Imaging Ctr, Taipei 10617, Taiwan
[4] Natl Taiwan Univ, Dept Phys, Taipei 10617, Taiwan
[5] Acad Sinica, Res Ctr Appl Sci RCAS, Taipei 115, Taiwan
[6] Natl Taiwan Univ Hosp, Dept Med Res, Taipei 10002, Taiwan
[7] Natl Taiwan Univ, Coll Med, Dept & Grad Inst Pharmacol, Taipei 10002, Taiwan
[8] Natl Tsing Hua Univ, Brain Res Ctr, Hsinchu 30013, Taiwan
[9] Acad Sinica, Inst Biomed Sci, Taipei 11529, Taiwan
[10] Natl Taiwan Univ Hosp, Cerebellar Res Ctr, Yun Lin Branch, Yunlin 64041, Taiwan
关键词
deep-learning noise reduction; high-speed volumetric image; neural networks; Purkinje cells; two-photon microscopy; PURKINJE-CELLS; MICROSCOPE; EXCITATION; NEURONS; VOLTAGE; BRAIN; PLUG;
D O I
10.1002/advs.202405293
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Two-photon high-speed fluorescence calcium imaging stands as a mainstream technique in neuroscience for capturing neural activities with high spatiotemporal resolution. However, challenges arise from the inherent tradeoff between acquisition speed and image quality, grappling with a low signal-to-noise ratio (SNR) due to limited signal photon flux. Here, a contrast-enhanced video-rate volumetric system, integrating a tunable acoustic gradient (TAG) lens-based high-speed microscopy with a TAG-SPARK denoising algorithm is demonstrated. The former facilitates high-speed dense z-sampling at sub-micrometer-scale intervals, allowing the latter to exploit the spatial redundancy of z-slices for self-supervised model training. This spatial redundancy-based approach, tailored for 4D (xyzt) dataset, not only achieves >700% SNR enhancement but also retains fast-spiking functional profiles of neuronal activities. High-speed plus high-quality images are exemplified by in vivo Purkinje cells calcium observation, revealing intriguing dendritic-to-somatic signal convolution, i.e., similar dendritic signals lead to reverse somatic responses. This tailored technique allows for capturing neuronal activities with high SNR, thus advancing the fundamental comprehension of neuronal transduction pathways within 3D neuronal architecture.
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页数:12
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