Improved Segmentation of Cellular Nuclei Using UNET Architectures for Enhanced Pathology Imaging

被引:1
作者
Castro, Simao [1 ]
Pereira, Vitor [1 ]
Silva, Rui [1 ]
机构
[1] Univ Lusiada, Ctr Res Org Markets & Ind Management COMEGI, P-1349001 Lisbon, Portugal
关键词
medical imaging; computer-aided diagnostics; machine learning; convolutional neural networks;
D O I
10.3390/electronics13163335
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Medical imaging is essential for pathology diagnosis and treatment, enhancing decision making and reducing costs, but despite various computational methodologies proposed to improve imaging modalities, further optimization is needed for broader acceptance. This study explores deep learning (DL) methodologies for classifying and segmenting pathological imaging data, optimizing models to accurately predict and generalize from training to new data. Different CNN and U-Net architectures are implemented for segmentation tasks, with their performance evaluated on histological image datasets using enhanced pre-processing techniques such as resizing, normalization, and data augmentation. These are trained, parameterized, and optimized using metrics such as accuracy, the DICE coefficient, and intersection over union (IoU). The experimental results show that the proposed method improves the efficiency of cell segmentation compared to networks, such as U-NET and W-UNET. The results show that the proposed pre-processing has improved the IoU from 0.9077 to 0.9675, about 7% better results; also, the values of the DICE coefficient obtained improved from 0.9215 to 0.9916, about 7% better results, surpassing the results reported in the literature.
引用
收藏
页数:11
相关论文
共 33 条
[11]  
Goodfellow I, 2016, ADAPT COMPUT MACH LE, P1
[12]   RECEPTIVE FIELDS, BINOCULAR INTERACTION AND FUNCTIONAL ARCHITECTURE IN CATS VISUAL CORTEX [J].
HUBEL, DH ;
WIESEL, TN .
JOURNAL OF PHYSIOLOGY-LONDON, 1962, 160 (01) :106-&
[13]   A survey of loss functions for semantic segmentation [J].
Jadon, Shruti .
2020 IEEE CONFERENCE ON COMPUTATIONAL INTELLIGENCE IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (CIBCB), 2020, :115-121
[14]   Multi-layer segmentation framework for cell nuclei using improved GVF Snake model, Watershed, and ellipse fitting [J].
Jia, Dongyao ;
Zhang, Chuanwang ;
Wu, Nengkai ;
Guo, Zhigang ;
Ge, Hairui .
BIOMEDICAL SIGNAL PROCESSING AND CONTROL, 2021, 67
[15]  
Kaggle, 2018, Data Science Bowl | Broad Bioimage Benchmark Collection
[16]   Advanced Convolutional Neural Networks for Precise White Blood Cell Subtype Classification in Medical Diagnostics [J].
Kanavos, Athanasios ;
Papadimitriou, Orestis ;
Al-Hussaeni, Khalil ;
Maragoudakis, Manolis ;
Karamitsos, Ioannis .
ELECTRONICS, 2024, 13 (14)
[17]  
Kingma D.P., 2014, arXiv, DOI 10.48550/arXiv.1412.6980
[18]   DenseRes-Unet: Segmentation of overlapped/clustered nuclei from multi organ histopathology images [J].
Kiran, Iqra ;
Raza, Basit ;
Ijaz, Areesha ;
Khan, Muazzam A. .
COMPUTERS IN BIOLOGY AND MEDICINE, 2022, 143
[19]  
Krupinski E A, 2000, Radiat Med, V18, P329
[20]   A survey on deep learning in medical image analysis [J].
Litjens, Geert ;
Kooi, Thijs ;
Bejnordi, Babak Ehteshami ;
Setio, Arnaud Arindra Adiyoso ;
Ciompi, Francesco ;
Ghafoorian, Mohsen ;
van der Laak, Jeroen A. W. M. ;
van Ginneken, Bram ;
Sanchez, Clara I. .
MEDICAL IMAGE ANALYSIS, 2017, 42 :60-88