Improved Segmentation of Cellular Nuclei Using UNET Architectures for Enhanced Pathology Imaging

被引:1
作者
Castro, Simao [1 ]
Pereira, Vitor [1 ]
Silva, Rui [1 ]
机构
[1] Univ Lusiada, Ctr Res Org Markets & Ind Management COMEGI, P-1349001 Lisbon, Portugal
关键词
medical imaging; computer-aided diagnostics; machine learning; convolutional neural networks;
D O I
10.3390/electronics13163335
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Medical imaging is essential for pathology diagnosis and treatment, enhancing decision making and reducing costs, but despite various computational methodologies proposed to improve imaging modalities, further optimization is needed for broader acceptance. This study explores deep learning (DL) methodologies for classifying and segmenting pathological imaging data, optimizing models to accurately predict and generalize from training to new data. Different CNN and U-Net architectures are implemented for segmentation tasks, with their performance evaluated on histological image datasets using enhanced pre-processing techniques such as resizing, normalization, and data augmentation. These are trained, parameterized, and optimized using metrics such as accuracy, the DICE coefficient, and intersection over union (IoU). The experimental results show that the proposed method improves the efficiency of cell segmentation compared to networks, such as U-NET and W-UNET. The results show that the proposed pre-processing has improved the IoU from 0.9077 to 0.9675, about 7% better results; also, the values of the DICE coefficient obtained improved from 0.9215 to 0.9916, about 7% better results, surpassing the results reported in the literature.
引用
收藏
页数:11
相关论文
共 33 条
[1]   State-of-the-art in artificial neural network applications: A survey [J].
Abiodun, Oludare Isaac ;
Jantan, Aman ;
Omolara, Abiodun Esther ;
Dada, Kemi Victoria ;
Mohamed, Nachaat AbdElatif ;
Arshad, Humaira .
HELIYON, 2018, 4 (11)
[2]  
Alom MZ, 2018, PROC NAECON IEEE NAT, P228, DOI 10.1109/NAECON.2018.8556686
[3]  
[Anonymous], 2013, Scholarpedia, DOI [DOI 10.4249/SCHOLARPEDIA.3516, 10.4249/scholarpedia.3516]
[4]   Segmentation in large-scale cellular electron microscopy with deep learning: A literature survey [J].
Aswath, Anusha ;
Alsahaf, Ahmad ;
Giepmans, Ben N. G. ;
Azzopardi, George .
MEDICAL IMAGE ANALYSIS, 2023, 89
[5]   Segmentation of cervical cell nuclei in high-resolution microscopic images: A new algorithm and a web-based software framework [J].
Bergmeir, Christoph ;
Garcia Silvente, Miguel ;
Manuel Benitez, Jose .
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2012, 107 (03) :497-512
[6]   Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl [J].
Caicedo, Juan C. ;
Goodman, Allen ;
Karhohs, Kyle W. ;
Cimini, Beth A. ;
Ackerman, Jeanelle ;
Haghighi, Marzieh ;
Heng, CherKeng ;
Becker, Tim ;
Minh Doan ;
McQuin, Claire ;
Rohban, Mohammad ;
Singh, Shantanu ;
Carpenter, Anne E. .
NATURE METHODS, 2019, 16 (12) :1247-+
[7]   CSU-Net: A CNN-Transformer Parallel Network for Multimodal Brain Tumour Segmentation [J].
Chen, Yu ;
Yin, Ming ;
Li, Yu ;
Cai, Qian .
ELECTRONICS, 2022, 11 (14)
[8]   Artificial Intelligence and Cellular Segmentation in Tissue Microscopy Images [J].
Durkee, Madeleine S. ;
Abraham, Rebecca ;
Clark, Marcus R. ;
Giger, Maryellen L. .
AMERICAN JOURNAL OF PATHOLOGY, 2021, 191 (10) :1693-1701
[9]   U-Net: deep learning for cell counting, detection, and morphometry [J].
Falk, Thorsten ;
Mai, Dominic ;
Bensch, Robert ;
Cicek, Oezguen ;
Abdulkadir, Ahmed ;
Marrakchi, Yassine ;
Boehm, Anton ;
Deubner, Jan ;
Jaeckel, Zoe ;
Seiwald, Katharina ;
Dovzhenko, Alexander ;
Tietz, Olaf ;
Dal Bosco, Cristina ;
Walsh, Sean ;
Saltukoglu, Deniz ;
Tay, Tuan Leng ;
Prinz, Marco ;
Palme, Klaus ;
Simons, Matias ;
Diester, Ilka ;
Brox, Thomas ;
Ronneberger, Olaf .
NATURE METHODS, 2019, 16 (01) :67-+
[10]   Machine Learning Empowering Personalized Medicine: A Comprehensive Review of Medical Image Analysis Methods [J].
Galic, Irena ;
Habijan, Marija ;
Leventic, Hrvoje ;
Romic, Kresimir .
ELECTRONICS, 2023, 12 (21)