Cell Painting Gallery: an open resource for image-based profiling

被引:3
作者
Weisbart, Erin [1 ]
Kumar, Ankur [1 ]
Arevalo, John [1 ]
Carpenter, Anne E. [1 ]
Cimini, Beth A. [1 ]
Singh, Shantanu [1 ]
机构
[1] Broad Inst MIT & Harvard, Imaging Platform Dept, Cambridge, MA 02142 USA
关键词
D O I
10.1038/s41592-024-02399-z
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:1775 / 1777
页数:3
相关论文
共 8 条
  • [1] Artificial intelligence for high content imaging in drug discovery
    Carreras-Puigvert, Jordi
    Spjuth, Ola
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2024, 87
  • [2] Image-based profiling for drug discovery: due for a machine-learning upgrade?
    Chandrasekaran, Srinivas Niranj
    Ceulemans, Hugo
    Boyd, Justin D.
    Carpenter, Anne E.
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2021, 20 (02) : 145 - 159
  • [3] Optimizing the Cell Painting assay for image-based profiling
    Cimini, Beth A.
    Chandrasekaran, Srinivas Niranj
    Kost-Alimova, Maria
    Miller, Lisa
    Goodale, Amy
    Fritchman, Briana
    Byrne, Patrick
    Garg, Sakshi
    Jamali, Nasim
    Logan, David J.
    Concannon, John B.
    Lardeau, Charles-Hugues
    Mouchet, Elizabeth
    Singh, Shantanu
    Abbasi, Hamdah Shafqat
    Aspesi, Jr Peter
    Boyd, Justin D.
    Gilbert, Tamara
    Gnutt, David
    Hariharan, Santosh
    Hernandez, Desiree
    Hormel, Gisela
    Juhani, Karolina
    Melanson, Michelle
    Mervin, Lewis H.
    Monteverde, Tiziana
    Pilling, James E.
    Skepner, Adam
    Swalley, Susanne E.
    Vrcic, Anita
    Weisbart, Erin
    Williams, Guy
    Yu, Shan
    Zapiec, Bolek
    Carpenter, Anne E.
    [J]. NATURE PROTOCOLS, 2023, 18 (07) : 1981 - +
  • [4] Multiplex Cytological Profiling Assay to Measure Diverse Cellular States
    Gustafsdottir, Sigrun M.
    Ljosa, Vebjorn
    Sokolnicki, Katherine L.
    Wilson, J. Anthony
    Walpita, Deepika
    Kemp, Melissa M.
    Seiler, Kathleen Petri
    Carrel, Hyman A.
    Golub, Todd R.
    Schreiber, Stuart L.
    Clemons, Paul A.
    Carpenter, Anne E.
    Shamji, Alykhan F.
    [J]. PLOS ONE, 2013, 8 (12):
  • [5] OME-Zarr: a cloud-optimized bioimaging file format with international community support
    Moore, Josh
    Basurto-Lozada, Daniela
    Besson, Sebastien
    Bogovic, John
    Bragantini, Jordao
    Brown, Eva M.
    Burel, Jean-Marie
    Moreno, Xavier Casas
    de Medeiros, Gustavo
    Diel, Erin E.
    Gault, David
    Ghosh, Satrajit S.
    Gold, Ilan
    Halchenko, Yaroslav O.
    Hartley, Matthew
    Horsfall, Dave
    Keller, Mark S.
    Kittisopikul, Mark
    Kovacs, Gabor
    Yoldas, Aybueke Kuepcue
    Kyoda, Koji
    de la Villegeorges, Albane le Tournoulx
    Li, Tong
    Liberali, Prisca
    Lindner, Dominik
    Linkert, Melissa
    Luthi, Joel
    Maitin-Shepard, Jeremy
    Manz, Trevor
    Marconato, Luca
    McCormick, Matthew
    Lange, Merlin
    Mohamed, Khaled
    Moore, William
    Norlin, Nils
    Ouyang, Wei
    Ozdemir, Bugra
    Palla, Giovanni
    Pape, Constantin
    Pelkmans, Lucas
    Pietzsch, Tobias
    Preibisch, Stephan
    Prete, Martin
    Rzepka, Norman
    Samee, Sameeul
    Schaub, Nicholas
    Sidky, Hythem
    Solak, Ahmet Can
    Stirling, David R.
    Striebel, Jonathan
    [J]. HISTOCHEMISTRY AND CELL BIOLOGY, 2023, 160 (03) : 223 - 251
  • [6] OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies
    Moore, Josh
    Allan, Chris
    Besson, Sebastien
    Burel, Jean-Marie
    Diel, Erin
    Gault, David
    Kozlowski, Kevin
    Lindner, Dominik
    Linkert, Melissa
    Manz, Trevor
    Moore, Will
    Pape, Constantin
    Tischer, Christian
    Swedlow, Jason R.
    [J]. NATURE METHODS, 2021, 18 (12) : 1496 - +
  • [7] Community-developed checklists for publishing images and image analyses
    Schmied, Christopher
    Nelson, Michael S.
    Avilov, Sergiy
    Bakker, Gert-Jan
    Bertocchi, Cristina
    Bischof, Johanna
    Boehm, Ulrike
    Brocher, Jan
    Carvalho, Mariana T.
    Chiritescu, Catalin
    Christopher, Jana
    Cimini, Beth A.
    Conde-Sousa, Eduardo
    Ebner, Michael
    Ecker, Rupert
    Eliceiri, Kevin
    Fernandez-Rodriguez, Julia
    Gaudreault, Nathalie
    Gelman, Laurent
    Grunwald, David
    Gu, Tingting
    Halidi, Nadia
    Hammer, Mathias
    Hartley, Matthew
    Held, Marie
    Jug, Florian
    Kapoor, Varun
    Koksoy, Ayse Aslihan
    Lacoste, Judith
    Le Devedec, Sylvia
    Le Guyader, Sylvie
    Liu, Penghuan
    Martins, Gabriel G.
    Mathur, Aastha
    Miura, Kota
    Montero Llopis, Paula
    Nitschke, Roland
    North, Alison
    Parslow, Adam C.
    Payne-Dwyer, Alex
    Plantard, Laure
    Ali, Rizwan
    Schroth-Diez, Britta
    Schuetz, Lucas
    Scott, Ryan T.
    Seitz, Arne
    Selchow, Olaf
    Sharma, Ved P.
    Spitaler, Martin
    Srinivasan, Sathya
    [J]. NATURE METHODS, 2024, 21 (02) : 170 - 181
  • [8] Distributed-Something: scripts to leverage AWS storage and computing for distributed workflows at scale
    Weisbart, Erin
    Cimini, Beth A.
    [J]. NATURE METHODS, 2023, 20 (08) : 1120 - 1121