The Evolutionary Interplay of Somatic and Germline Mutation Rates

被引:2
作者
Beichman, Annabel C. [1 ]
Zhu, Luke [2 ]
Harris, Kelley [1 ,3 ]
机构
[1] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA
[2] Univ Washington, Dept Bioengn, Seattle, WA USA
[3] Fred Hutchinson Canc Ctr, Computat Biol Div, Seattle, WA 98109 USA
基金
美国国家卫生研究院;
关键词
germline mutation; somatic mutation; drift-barrier hypothesis; mutator; allele; Peto's paradox; aging; effective population size; DE-NOVO MUTATIONS; DNA-DAMAGE; BODY-SIZE; POPULATION-SIZE; NEUTRAL THEORY; GENETIC DRIFT; LIFE-SPAN; CANCER; GENOME; MECHANISMS;
D O I
10.1146/annurev-biodatasci-102523-104225
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Novel sequencing technologies are making it increasingly possible to measure the mutation rates of somatic cell lineages. Accurate germline mutation rate measurement technologies have also been available for a decade, making it possible to assess how this fundamental evolutionary parameter varies across the tree of life. Here, we review some classical theories about germline and somatic mutation rate evolution that were formulated using principles of population genetics and the biology of aging and cancer. We find that somatic mutation rate measurements, while still limited in phylogenetic diversity, seem consistent with the theory that selection to preserve the soma is proportional to life span. However, germline and somatic theories make conflicting predictions regarding which species should have the most accurate DNA repair. Resolving this conflict will require carefully measuring how mutation rates scale with time and cell division and achieving a better understanding of mutation rate pleiotropy among cell types.
引用
收藏
页码:83 / 105
页数:23
相关论文
共 157 条
[41]   Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination [J].
Geraldes, A. ;
Basset, P. ;
Smith, K. L. ;
Nachman, M. W. .
MOLECULAR ECOLOGY, 2011, 20 (22) :4722-4736
[42]   Mutational Signatures of Replication Timing and Epigenetic Modification Persist through the Global Divergence of Mutation Spectra across the Great Ape Phylogeny [J].
Goldberg, Michael E. ;
Harris, Kelley .
GENOME BIOLOGY AND EVOLUTION, 2022, 14 (01)
[43]   SPANDRELS OF SAN-MARCO AND THE PANGLOSSIAN PARADIGM - A CRITIQUE OF THE ADAPTATIONIST PROGRAM [J].
GOULD, SJ ;
LEWONTIN, RC .
PROCEEDINGS OF THE ROYAL SOCIETY SERIES B-BIOLOGICAL SCIENCES, 1979, 205 (1161) :581-598
[44]   Swiss Canine Cancer Registry 1955-2008: Occurrence of the Most Common Tumour Diagnoses and Influence of Age, Breed, Body Size, Sex and Neutering Status on Tumour Development [J].
Gruntzig, K. ;
Graf, R. ;
Boo, G. ;
Guscetti, F. ;
Hassig, M. ;
Axhausen, K. W. ;
Fabrikant, S. ;
Welle, M. ;
Meier, D. ;
Folkers, G. ;
Pospischil, A. .
JOURNAL OF COMPARATIVE PATHOLOGY, 2016, 155 (2-3) :156-170
[45]   SLiM 3: Forward Genetic Simulations Beyond the Wright-Fisher Model [J].
Haller, Benjamin C. ;
Messer, Philipp W. .
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 36 (03) :632-637
[46]   Evidence for recent, population-specific evolution of the human mutation rate [J].
Harris, Kelley .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (11) :3439-3444
[47]   Rapid evolution of the human mutation spectrum [J].
Harris, Kelly ;
Pritchard, Jonathan K. .
ELIFE, 2017, 6
[48]   Classic Selective Sweeps Were Rare in Recent Human Evolution [J].
Hernandez, Ryan D. ;
Kelley, Joanna L. ;
Elyashiv, Eyal ;
Melton, S. Cord ;
Auton, Adam ;
McVean, Gilean ;
Sella, Guy ;
Przeworski, Molly .
SCIENCE, 2011, 331 (6019) :920-924
[49]   A framework for how environment contributes to cancer risk [J].
Hochberg, Michael E. ;
Noble, Robert J. .
ECOLOGY LETTERS, 2017, 20 (02) :117-134
[50]   The raw material of evolution [J].
Hoelzel, A. Rus ;
Lynch, Michael .
SCIENCE, 2023, 381 (6661) :942-943