Insight into the in silico Study and Biological Evaluation of Curcumin Analogue Compounds as New Potential Inhibitors for Dengue DEN2 NS2B/NS3 Serine Protease

被引:0
|
作者
Frimayanti, Neni [1 ]
Herfindo, Noval [2 ]
Aisyah, Siti [2 ]
Rahmawaty, Eni Nur [2 ]
机构
[1] Sekolah Tinggi Ilmu Farm Riau, Pekanbaru, Indonesia
[2] Univ Riau, Fac Math & Nat Prod, Dept Chem, Kampus Bina Widya KM 12,5 Simpang Baru, Pekanbaru 28293, Riau, Indonesia
来源
SAINS MALAYSIANA | 2024年 / 53卷 / 08期
关键词
ADME; curcumin; dengue DEN2 NS2B/NS3; B/N S3; docking; molecular dynamic; DERIVATIVES; FLAVONOL; DESIGN;
D O I
10.17576/jsm-2024-5308-19
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Dengue is an infectious disease caused by a virus and it is a rapidly emerging pandemic disease in many parts of the world. However, to date, one licensed tetravalent Dengvaxia vaccine based on a yellow fever virus vaccine variant has been reported. In silico and biological assay were performed to twenty two curcumin analogue compounds with DEN2 NS2B/NS3 B/N S3 serine protease as target. The main purpose of this study were to predict and estimate the binding interaction and also the ability of curcumin analogue compounds to be potential inhibitors for DEN2 NS2B/NS3. B/N S3. Computational pipeline such as molecular docking and molecular dynamic were constructed to get insight into potential inhibitor for DEN2 NS2B/NS3. B/N S3. Biological assay was performed to validate in silico results. Docking results reported that compounds 3 , 10 , and 13 have the lowest binding free energy value of-15.2 kcal/mol,-13.66 kcal/mol and-13.68 kcal/mol, respectively. All these three compounds were also able to interacts with Lys74 (i.e., allosteric site of serine protease) through hydrogen bonding, these binding is keep maintain during the molecular dynamic simulation. Among all of the compounds tested on their percent inhibition against DEN2 NS2B/NS3, B/N S3, compounds 3 , 10 , and 13 exhibited the best of percent inhibition. Thus, three of these compounds can be used as potential candidate for the next stage in the drug discovery process.
引用
收藏
页码:1973 / 1984
页数:12
相关论文
共 50 条
  • [21] Pharmacophoric characteristics of dengue virus NS2B/NS3pro inhibitors: a systematic review of the most promising compounds
    Leonel, Camyla Alves
    Lima, William Gustavo
    dos Santos, Michelli
    Ferraz, Ariane Coelho
    Taranto, Alex Gutterres
    de Magalhes, Jose Carlos
    dos Santos, Luciana Lara
    Siqueira Ferreira, Jaqueline Maria
    ARCHIVES OF VIROLOGY, 2018, 163 (03) : 575 - 586
  • [22] Computational Screening of FDA Approved Drugs from ZINC Database for Potential Inhibitors of Zika Virus NS2B/NS3 Protease: A Molecular Docking and Dynamics Simulation Study
    Odhar, Hasanain Abdulhameed
    Ahjel, Salam Waheed
    Odhar, Zanan Abdulhameed
    JOURNAL OF PHARMACEUTICAL RESEARCH INTERNATIONAL, 2021, 33 (39B) : 308 - 319
  • [23] Computational Design of Dengue Type-2 NS2B/NS3 Protease Inhibitor: 2D/3D QSAR of Quinoline and Its Molecular Docking
    Hariono, Maywan
    Kamarulzaman, Ezatul E.
    Wahab, Habibah A.
    PROCEEDINGS OF THE 3RD INTERNATIONAL CONFERENCE ON COMPUTATION FOR SCIENCE AND TECHNOLOGY, 2015, 5 : 63 - 81
  • [24] NS2B/NS3 protease: allosteric effect of mutations associated with the pathogenicity of tick-borne encephalitis virus
    Potapova, Ulyana V.
    Feranchuk, Sergey I.
    Potapov, Vladimir V.
    Kulakova, Nina V.
    Kondratov, Ilya G.
    Leonova, Galina N.
    Belikov, Sergey I.
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2012, 30 (06) : 638 - 651
  • [25] Discovery of Ganoderma lucidum triterpenoids as potential inhibitors against Dengue virus NS2B-NS3 protease
    Bharadwaj, Shiv
    Lee, Kyung Eun
    Dwivedi, Vivek Dhar
    Yadava, Umesh
    Panwar, Aleksha
    Lucas, Stuart. J.
    Pandey, Amit
    Kang, Sang Gu
    SCIENTIFIC REPORTS, 2019, 9 (1)
  • [26] Discovery of azaleatin as a potential allosteric inhibitor for dengue NS2B-NS3 protease using in vitro and in silico studies
    Mustafa, Nur Farhana
    Cheng, Kian-Kai
    Nadri, Muhammad Helmi
    Razali, Siti Aisyah
    Zakaria, Iffah Izzati
    Salin, Nurul Hanim
    Amran, Syazwani Itri
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024,
  • [27] Flavonoids as noncompetitive inhibitors of Dengue virus NS2B-NS3 protease: Inhibition kinetics and docking studies
    Freitas de Sousa, Lorena Ramos
    Wu, Hongmei
    Nebo, Liliane
    Fernandes, Joao Batista
    das Gracas Fernandes da Silva, Maria Fatima
    Kiefer, Werner
    Kanitz, Manuel
    Bodem, Jochen
    Diederich, Wibke E.
    Schirmeister, Tanja
    Vieira, Paulo Cezar
    BIOORGANIC & MEDICINAL CHEMISTRY, 2015, 23 (03) : 466 - 470
  • [28] In silico validation of allosteric inhibitors targeting Zika virus NS2B-NS3 protease
    Wang, Yeng-Tseng
    Hsieh, Yuan-Chin
    Wu, Tin-Yu
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2024, 26 (43) : 27684 - 27693
  • [29] Adenosyl derivatives as a potential inhibitors of NS3 protease of Japanese encephalitis virus (JEV): In silico molecular insight into therapeutic discovery
    Tiwari, Rakesh Kumar
    Pandey, Vinayak
    Ojha, R. P.
    Pandey, Vishnudatt
    Pandey, Muralidhar
    COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2024, 1241
  • [30] A Novel Dengue Virus Inhibitor, BP13944, Discovered by High-Throughput Screening with Dengue Virus Replicon Cells Selects for Resistance in the Viral NS2B/NS3 Protease
    Yang, Chi-Chen
    Hu, Han-Shu
    Wu, Ren-Huang
    Wu, Szu-Huei
    Lee, Shiow-Ju
    Jiaang, Weir-Torn
    Chern, Jyh-Haur
    Huang, Zhi-Shun
    Wu, Huey-Nan
    Chang, Chung-Ming
    Yueh, Andrew
    ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2014, 58 (01) : 110 - 119