Vitacrystallography: Structural Biomarkers of Breast Cancer Obtained by X-ray Scattering

被引:1
作者
Denisov, Sergey [1 ,2 ]
Blinchevsky, Benjamin [1 ,3 ]
Friedman, Jonathan [3 ,4 ]
Gerbelli, Barbara [5 ]
Ajeer, Ash [5 ]
Adams, Lois [5 ]
Greenwood, Charlene [3 ,5 ]
Rogers, Keith [3 ,6 ]
Mourokh, Lev [3 ,4 ]
Lazarev, Pavel [1 ,3 ]
机构
[1] Matur UK Ltd, 5 New St Sq, London EC4A 3TW, England
[2] Univ Paris Saclay, Inst Chim Phys, UMR8000, CNRS, Bat 349, F-91405 Orsay, France
[3] EosDx Inc, 1455 Adams Dr, Menlo Pk, CA 94025 USA
[4] City Univ New York, Queens Coll, Phys Dept, 65-30 Kissena Blvd, Flushing, NY 11367 USA
[5] Keele Univ, Sch Chem & Phys Sci, Keele ST5 5BG, England
[6] Cranfield Univ, Shrivenham Campus, Swindon SN6 8LA, England
关键词
structural biomarkers; X-ray scattering; extracellular matrix; cancer detection; machine learning; EXTRACELLULAR-MATRIX; COHERENT; TISSUE;
D O I
10.3390/cancers16142499
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Simple Summary Breast cancer ranks as the most prevalent cancer among women. Current screening includes regular mammography and subsequent biopsy if the mammography results are abnormal. These procedures are costly and uncomfortable. We propose an alternative non-invasive method based on X-ray scattering. Using a machine learning approach, we have examined almost 3000 measurements of cancerous and non-cancerous samples belonging to 110 patients and shown excellent results on cancer/non-cancer separation. This can lead to patient-friendly, fast, and economical solutions for breast cancer screening to complement mammography and reduce biopsy. It should be emphasized that this approach can be readily extended to other types of cancer and even other diseases.Abstract With breast cancer being one of the most widespread causes of death for women, there is an unmet need for its early detection. For this purpose, we propose a non-invasive approach based on X-ray scattering. We measured samples from 107 unique patients provided by the Breast Cancer Now Tissue Biobank, with the total dataset containing 2958 entries. Two different sample-to-detector distances, 2 and 16 cm, were used to access various structural biomarkers at distinct ranges of momentum transfer values. The biomarkers related to lipid metabolism are consistent with those of previous studies. Machine learning analysis based on the Random Forest Classifier demonstrates excellent performance metrics for cancer/non-cancer binary decisions. The best sensitivity and specificity values are 80% and 92%, respectively, for the sample-to-detector distance of 2 cm and 86% and 83% for the sample-to-detector distance of 16 cm.
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页数:11
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共 44 条
[11]   Bone vascular niche E-selectin induces mesenchymal-epithelial transition and Wnt activation in cancer cells to promote bone metastasis [J].
Esposito, Mark ;
Mondal, Nandini ;
Greco, Todd M. ;
Wei, Yong ;
Spadazzi, Chiara ;
Lin, Song-Chang ;
Zheng, Hanqiu ;
Cheung, Corey ;
Magnani, John L. ;
Lin, Sue-Hwa ;
Cristea, Ileana M. ;
Sackstein, Robert ;
Kang, Yibin .
NATURE CELL BIOLOGY, 2019, 21 (05) :627-+
[12]   Wavelet-based feature extraction applied to small-angle x-ray scattering patterns from breast tissue: a tool for differentiating between tissue types [J].
Falzon, G. ;
Pearson, S. ;
Murison, R. ;
Hall, C. ;
Siu, K. ;
Evans, A. ;
Rogers, K. ;
Lewis, R. .
PHYSICS IN MEDICINE AND BIOLOGY, 2006, 51 (10) :2465-2477
[13]   The extracellular matrix at a glance [J].
Frantz, Christian ;
Stewart, Kathleen M. ;
Weaver, Valerie M. .
JOURNAL OF CELL SCIENCE, 2010, 123 (24) :4195-4200
[14]   Structural Biomarkers for Breast Cancer Determined by X-Ray Diffraction [J].
Friedman, Jonathan ;
Blinchevsky, Benjamin ;
Slight, Maria ;
Tanaka, Aika ;
Lazarev, Alexander ;
Zhang, Wei ;
Aram, Byron ;
Ghadimi, Melanis ;
Lomis, Thomas ;
Mourokh, Lev ;
Lazarev, Pavel .
QUANTUM EFFECTS AND MEASUREMENT TECHNIQUES IN BIOLOGY AND BIOPHOTONICS, 2024, 12863
[15]   Dietary fat and lipid metabolism in the tumor microenvironment [J].
Goswami, Swagata ;
Zhang, Qiming ;
Celik, Cigdem Elif ;
Reich, Ethan M. ;
Yilmaz, Omer H. .
BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER, 2023, 1878 (06)
[16]   Towards new material biomarkers for fracture risk [J].
Greenwood, C. ;
Clement, J. ;
Dicken, A. ;
Evans, J. P. O. ;
Lyburn, I. ;
Martin, R. M. ;
Rogers, K. ;
Stone, N. ;
Zioupos, P. .
BONE, 2016, 93 :55-63
[17]   Breast Tumor Microcalcification Induced by Bone Morphogenetic Protein-2: A New Murine Model for Human Breast Tumor Diagnosis [J].
Hajibeigi, Asghar ;
Nasr, Khaled ;
Udayakumar, Durga ;
Kien Nham ;
Lenkinski, Robert E. .
CONTRAST MEDIA & MOLECULAR IMAGING, 2018,
[18]   Multiscale characterization of the mineral phase at skeletal sites of breast cancer metastasis [J].
He, Frank ;
Chiou, Aaron E. ;
Loh, Hyun Chae ;
Lynch, Maureen ;
Seo, Bo Ri ;
Song, Young Hye ;
Lee, Min Joon ;
Hoerth, Rebecca ;
Bortel, Emely L. ;
Willie, Bettina M. ;
Duda, Georg N. ;
Estroff, Lara A. ;
Masic, Admir ;
Wagermaier, Wolfgang ;
Fratzl, Peter ;
Fischbach, Claudia .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (40) :10542-10547
[19]   On the state of crystallography at the dawn of the electron microscopy revolution [J].
Higgins, Matthew K. ;
Lea, Susan M. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2017, 46 :95-101
[20]   The Extracellular Matrix: Not Just Pretty Fibrils [J].
Hynes, Richard O. .
SCIENCE, 2009, 326 (5957) :1216-1219