Whole exome sequencing in relapsed or refractory childhood cancer: case series

被引:0
作者
Thangpong, Rungroj [1 ]
Nuwongsri, Pattarin [2 ]
Ittiwut, Chupong [2 ,3 ]
Ittiwut, Rungnapa [2 ,3 ]
Phokaew, Chureerat [3 ]
Techavichit, Piti [4 ]
Suphapeetiporn, Kanya [2 ,3 ]
机构
[1] Chulalongkorn Univ, Fac Med, Dept Pediat, Bangkok 10330, Thailand
[2] Thai Red Cross Soc, King Chulalongkorn Mem Hosp, Excellence Ctr Genom & Precis Med, Bangkok, Thailand
[3] Chulalongkorn Univ, Ctr Excellence Med Genom, Med Genom Cluster, Dept Pediat,Fac Med, Bangkok 10330, Thailand
[4] Thammasat Univ, Fac Med, Dept Pediat, Div Hematol & Oncol, Bangkok 10330, Thailand
关键词
exome sequencing; germline mutation; pediatric cancer; sequencing analysis; somatic mutation; JOINT-CONSENSUS-RECOMMENDATION; COLORECTAL-CANCER; GNAS MUTATIONS; P53; MUTATION; ASSOCIATION; GUIDELINES; STANDARDS; VARIANTS; GENETICS; SURVIVAL;
D O I
10.2478/abm-2024-0025
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Background: The prognosis for relapsed or refractory childhood cancer is approximately 20%. Genetic alterations are one of the significant contributing factors to the prognosis of patients. Objective: To investigate the molecular profile of relapsed or refractory childhood cancers in Thai cases. Methods: The study design is a descriptive study of patients <18 years old, suspected or diagnosed of relapsed or refractory childhood cancer who underwent whole exome sequencing (WES). Results: WES was successfully performed in both the tumor and the blood or saliva samples obtained from 4 unrelated patients. Six different variants were identified in the NCOR2, COL6A3, TP53, and SMAD4 genes. These alterations were found to be associated with tumor aggressiveness. Conclusion: This study is the first one to demonstrate genetic alterations by using WES in relapsed or refractory childhood cancer in Thai cases.
引用
收藏
页码:186 / 191
页数:6
相关论文
共 22 条
  • [1] P53 GENE DELETION PREDICTS FOR POOR SURVIVAL AND NONRESPONSE TO THERAPY WITH PURINE ANALOGS IN CHRONIC B-CELL LEUKEMIAS
    DOHNER, H
    FISCHER, K
    BENTZ, M
    HANSEN, K
    BENNER, A
    CABOT, G
    DIEHL, D
    SCHLENK, R
    COY, J
    STILGENBAUER, S
    VOLKMANN, M
    GALLE, PR
    POUSTKA, A
    HUNSTEIN, W
    LICHTER, P
    [J]. BLOOD, 1995, 85 (06) : 1580 - 1589
  • [2] GNAS Mutations Identify a Set of Right-Sided, RAS Mutant, Villous Colon Cancers
    Fecteau, Ryan E.
    Lutterbaugh, James
    Markowitz, Sanford D.
    Willis, Joseph
    Guda, Kishore
    [J]. PLOS ONE, 2014, 9 (01):
  • [3] Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
    Gao, Jianjiong
    Aksoy, Buelent Arman
    Dogrusoz, Ugur
    Dresdner, Gideon
    Gross, Benjamin
    Sumer, S. Onur
    Sun, Yichao
    Jacobsen, Anders
    Sinha, Rileen
    Larsson, Erik
    Cerami, Ethan
    Sander, Chris
    Schultz, Nikolaus
    [J]. SCIENCE SIGNALING, 2013, 6 (269) : pl1
  • [4] Howlader N., SEER Cancer Statistics Review National Cancer Institute 19752018
  • [5] Molecular Profiling of Hard-to-Treat Childhood and Adolescent Cancers
    Khater, Fida
    Vairy, Stephanie
    Langlois, Sylvie
    Dumoucel, Sophie
    Sontag, Thomas
    St-Onge, Pascal
    Bittencourt, Henrique
    Dal Soglio, Dorothee
    Champagne, Josette
    Duval, Michel
    Leclerc, Jean-Marie
    Laverdiere, Caroline
    Thai Hoa Tran
    Patey, Natalie
    Ellezam, Benjamin
    Perreault, Sebastien
    Piche, Nelson
    Samson, Yvan
    Teira, Pierre
    Jabado, Nada
    Michon, Bruno
    Brossard, Josee
    Marzouki, Monia
    Cellot, Sonia
    Sinnett, Daniel
    [J]. JAMA NETWORK OPEN, 2019, 2 (04) : e192906
  • [6] Nuclear corepressors NCOR1/NCOR2 regulate B cell development, maintain genomic integrity and prevent transformation
    Lee, Robin D.
    Knutson, Todd P.
    Munro, Sarah A.
    Miller, Jeffrey T.
    Heltemes-Harris, Lynn M.
    Mullighan, Charles G.
    Jepsen, Kristen
    Farrar, Michael A.
    [J]. NATURE IMMUNOLOGY, 2022, 23 (12) : 1763 - +
  • [7] The first 30 years of p53: growing ever more complex
    Levine, Arnold J.
    Oren, Moshe
    [J]. NATURE REVIEWS CANCER, 2009, 9 (10) : 749 - 758
  • [8] Standards and Guidelines for the Interpretation and Reporting of Sequence Variants in Cancer A Joint Consensus Recommendation of the Association for Molecular Pathology, American Society of Clinical Oncology, and College of American Pathologists
    Li, Marilyn M.
    Datto, Michael
    Duncavage, Eric J.
    Kulkarni, Shashikant
    Lindeman, Neal I.
    Roy, Somak
    Tsimberidou, Apostolia M.
    Vnencak-Jones, Cindy L.
    Wolff, Daynna J.
    Younes, Anas
    Nikiforova, Marina N.
    [J]. JOURNAL OF MOLECULAR DIAGNOSTICS, 2017, 19 (01) : 4 - 23
  • [9] GNAS mutations are present in colorectal traditional serrated adenomas, serrated tubulovillous adenomas and serrated adenocarcinomas with adverse prognostic features
    Liu, Cheng
    McKeone, Diane M.
    Walker, Neal I.
    Bettington, Mark L.
    Leggett, Barbara A.
    Whitehall, Vicki L. J.
    [J]. HISTOPATHOLOGY, 2017, 70 (07) : 1079 - 1088
  • [10] Clinical and Biologic Features Predictive of Survival After Relapse of Neuroblastoma: A Report From the International Neuroblastoma Risk Group Project
    London, Wendy B.
    Castel, Victoria
    Monclair, Tom
    Ambros, Peter F.
    Pearson, Andrew D. J.
    Cohn, Susan L.
    Berthold, Frank
    Nakagawara, Akira
    Ladenstein, Ruth L.
    Iehara, Tomoko
    Matthay, Katherine K.
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2011, 29 (24) : 3286 - 3292