Integrated Multi-Omics Analysis of Cerebrospinal Fluid in Postoperative Delirium

被引:2
作者
Tripp, Bridget A. [1 ]
Dillon, Simon T. [2 ,3 ]
Yuan, Min [4 ]
Asara, John M. [3 ,4 ]
Vasunilashorn, Sarinnapha M. [3 ,5 ,6 ]
Fong, Tamara G. [3 ,7 ,8 ]
Inouye, Sharon K. [3 ,5 ,8 ]
Ngo, Long H. [3 ,5 ,6 ]
Marcantonio, Edward R. [3 ,5 ]
Xie, Zhongcong [3 ,9 ]
Libermann, Towia A. [2 ,3 ,5 ]
Otu, Hasan H. [1 ]
机构
[1] Univ Nebraska Lincoln, Dept Elect & Comp Engn, Lincoln, NE 68588 USA
[2] Beth Israel Deaconess Med Ctr, Genom Prote Bioinformat & Syst Biol Ctr, Boston, MA 02215 USA
[3] Harvard Med Sch, Boston, MA 02215 USA
[4] Beth Israel Deaconess Med Ctr, Div Signal Transduct & Mass Spectrometry Core, Boston, MA 02115 USA
[5] Beth Israel Deaconess Med Ctr, Dept Med, Boston, MA 02115 USA
[6] Harvard TH Chan Sch Publ Hlth, Boston, MA 02115 USA
[7] Beth Israel Deaconess Med Ctr, Dept Neurol, Boston, MA 02115 USA
[8] Hebrew SeniorLife, Marcus Inst Aging Res, Aging Brain Ctr, Boston, MA 02131 USA
[9] Massachusetts Gen Hosp, Dept Anesthesia Crit Care & Pain Med, Boston, MA 02114 USA
关键词
delirium; risk factors; multi-omics; lipidomics; proteomics; metabolomics; MINI-MENTAL STATE; ALZHEIMERS-DISEASE; OLDER PATIENTS; HOMOCYSTEINE; METABOLITES; KYNURENINE; PROTEOMICS; SYMPTOMS; DEMENTIA; LIPIDS;
D O I
10.3390/biom14080924
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Preoperative risk biomarkers for delirium may aid in identifying high-risk patients and developing intervention therapies, which would minimize the health and economic burden of postoperative delirium. Previous studies have typically used single omics approaches to identify such biomarkers. Preoperative cerebrospinal fluid (CSF) from the Healthier Postoperative Recovery study of adults >= 63 years old undergoing elective major orthopedic surgery was used in a matched pair delirium case-no delirium control design. We performed metabolomics and lipidomics, which were combined with our previously reported proteomics results on the same samples. Differential expression, clustering, classification, and systems biology analyses were applied to individual and combined omics datasets. Probabilistic graph models were used to identify an integrated multi-omics interaction network, which included clusters of heterogeneous omics interactions among lipids, metabolites, and proteins. The combined multi-omics signature of 25 molecules attained an AUC of 0.96 [95% CI: 0.85-1.00], showing improvement over individual omics-based classification. We conclude that multi-omics integration of preoperative CSF identifies potential risk markers for delirium and generates new insights into the complex pathways associated with delirium. With future validation, this hypotheses-generating study may serve to build robust biomarkers for delirium and improve our understanding of its pathophysiology.
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页数:22
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共 99 条
[1]   The SwissLipids knowledgebase for lipid biology [J].
Aimo, Lucila ;
Liechti, Robin ;
Hyka-Nouspikel, Nevila ;
Niknejad, Anne ;
Gleizes, Anne ;
Gotz, Lou ;
Kuznetsov, Dmitry ;
David, Fabrice P. A. ;
van der Goot, F. Gisou ;
Riezman, Howard ;
Bougueleret, Lydie ;
Xenarios, Ioannis ;
Bridge, Alan .
BIOINFORMATICS, 2015, 31 (17) :2860-2866
[2]  
Albert M S, 1992, J Geriatr Psychiatry Neurol, V5, P14
[3]   DynaVenn: web-based computation of the most significant overlap between ordered sets [J].
Amand, Jeremy ;
Fehlmann, Tobias ;
Backes, Christina ;
Keller, Andreas .
BMC BIOINFORMATICS, 2019, 20 (01)
[4]   Proteomics: Technologies and Their Applications [J].
Aslam, Bilal ;
Basit, Madiha ;
Nisar, Muhammad Atif ;
Khurshid, Mohsin ;
Rasool, Muhammad Hidayat .
JOURNAL OF CHROMATOGRAPHIC SCIENCE, 2017, 55 (02) :182-196
[5]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[6]   The use of the area under the roc curve in the evaluation of machine learning algorithms [J].
Bradley, AP .
PATTERN RECOGNITION, 1997, 30 (07) :1145-1159
[7]   Recon3D enables a three-dimensional view of gene variation in human metabolism [J].
Brunk, Elizabeth ;
Sahoo, Swagatika ;
Zielinski, Daniel C. ;
Altunkaya, Ali ;
Drager, Andreas ;
Mih, Nathan ;
Gatto, Francesco ;
Nilsson, Avlant ;
Gonzalez, German Andres Preciat ;
Aurich, Maike Kathrin ;
Prlic, Andreas ;
Sastry, Anand ;
Danielsdottir, Anna D. ;
Heinken, Almut ;
Noronha, Alberto ;
Rose, Peter W. ;
Burley, Stephen K. ;
Fleming, Ronan M. T. ;
Nielsen, Jens ;
Thiele, Ines ;
Palsson, Bernhard O. .
NATURE BIOTECHNOLOGY, 2018, 36 (03) :272-+
[8]   Kynurenines in CNS disease: regulation by inflammatory cytokines [J].
Campbell, Brian M. ;
Charych, Erik ;
Lee, Anna W. ;
Moeller, Thomas .
FRONTIERS IN NEUROSCIENCE, 2014, 8
[9]   Assessment of Variability in the SOMAscan Assay [J].
Candia, Julian ;
Cheung, Foo ;
Kotliarov, Yuri ;
Fantoni, Giovanna ;
Sellers, Brian ;
Griesman, Trevor ;
Huang, Jinghe ;
Stuccio, Sarah ;
Zingone, Adriana ;
Ryan, Brid M. ;
Tsang, John S. ;
Biancotto, Angelique .
SCIENTIFIC REPORTS, 2017, 7
[10]   Endocannabinoid Signaling and Synaptic Function [J].
Castillo, Pablo E. ;
Younts, Thomas J. ;
Chavez, Andres E. ;
Hashimotodani, Yuki .
NEURON, 2012, 76 (01) :70-81