Machine learning in oncological pharmacogenomics: advancing personalized chemotherapy

被引:1
作者
Avci, Cigir Biray [1 ]
Bagca, Bakiye Goker [2 ]
Shademan, Behrouz [3 ]
Takanlou, Leila Sabour [1 ]
Takanlou, Maryam Sabour [1 ]
Nourazarian, Alireza [4 ]
机构
[1] Ege Univ, Fac Med, Dept Med Biol, Izmir, Turkiye
[2] Adnan Menderes Univ, Fac Med, Dept Med Biol, Aydin, Turkiye
[3] Tabriz Univ Med Sci, Stem Cell Res Ctr, Tabriz, Iran
[4] Khoy Univ Med Sci, Dept Basic Med Sci, Khoy, Iran
关键词
Machine learning (ML); Personalized chemotherapy; Oncological pharmacogenomics; Genetic variability; Treatment personalization; IMMUNOTHERAPY RESPONSE; MODELS; PHARMACOKINETICS; CARCINOMA; MEDICINE; GENES; CELL;
D O I
10.1007/s10142-024-01462-4
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
This review analyzes the application of machine learning (ML) in oncological pharmacogenomics, focusing on customizing chemotherapy treatments. It explores how ML can analyze extensive genomic, proteomic, and other omics datasets to identify genetic patterns associated with drug responses. This, in turn, facilitates personalized therapies that are more effective and have fewer side effects. Recent studies have emphasized ML's revolutionary role of ML in personalized oncology treatment by identifying genetic variability and understanding cancer pharmacodynamics. Integrating ML with electronic health records and clinical data shows promise in refining chemotherapy recommendations by considering the complex influencing factors. Although standard chemotherapy depends on population-based doses and treatment regimens, customized techniques use genetic information to tailor treatments for specific patients, potentially enhancing efficacy and reducing adverse effects.However, challenges, such as model interpretability, data quality, transparency, ethical issues related to data privacy, and health disparities, remain. Machine learning has been used to transform oncological pharmacogenomics by enabling personalized chemotherapy treatments. This review highlights ML's potential of ML to enhance treatment effectiveness and minimize side effects through detailed genetic analysis. It also addresses ongoing challenges including improved model interpretability, data quality, and ethical considerations. The review concludes by emphasizing the importance of rigorous clinical trials and interdisciplinary collaboration in the ethical implementation of ML-driven personalized medicine, paving the way for improved outcomes in cancer patients and marking a new frontier in cancer treatment.
引用
收藏
页数:18
相关论文
共 127 条
  • [1] Alberto IRI, 2023, LANCET DIGIT HEALTH, V5, DOI [10.1016/s2589-7500(23)00025-0, 10.1016/S2589-7500(23)00025-0]
  • [2] From pharmacogenetics to pharmaco-omics: Milestones and future directions
    Auwerx, Chiara
    Sadler, Marie C.
    Reymond, Alexandre
    Kutalik, Zoltan
    [J]. HUMAN GENETICS AND GENOMICS ADVANCES, 2022, 3 (02):
  • [3] Deciphering the Impact of Rare Missense Variants in EGFR-TKI-Resistant Non-Small-Cell Lung Cancer through Whole Exome Sequencing: A Computational Approach
    Balasundaram, Ambritha
    Doss, George Priya C.
    [J]. ACS OMEGA, 2024, 9 (14): : 16288 - 16302
  • [4] Machine learning-driven clinical decision support system for concept-based searching: a field trial in a Norwegian hospital
    Berge, G. T.
    Granmo, O. C.
    Tveit, T. O.
    Munkvold, B. E.
    Ruthjersen, A. L.
    Sharma, J.
    [J]. BMC MEDICAL INFORMATICS AND DECISION MAKING, 2023, 23 (01)
  • [5] Genotypes Affecting the Pharmacokinetics of Anticancer Drugs
    Bertholee, Daphne
    Maring, Jan Gerard
    van Kuilenburg, Andre B. P.
    [J]. CLINICAL PHARMACOKINETICS, 2017, 56 (04) : 317 - 337
  • [6] Current challenges and opportunities for pharmacogenomics: perspective of the Industry Pharmacogenomics Working Group (I-PWG)
    Bienfait, Karina
    Chhibber, Aparna
    Marshall, Jean-Claude
    Armstrong, Martin
    Cox, Charles
    Shaw, Peter M.
    Paulding, Charles
    [J]. HUMAN GENETICS, 2022, 141 (06) : 1165 - 1173
  • [7] Personalization of medical treatments in oncology: time for rethinking the disease concept to improve individual outcomes
    Bizzarri, Mariano
    Fedeli, Valeria
    Monti, Noemi
    Cucina, Alessandra
    Jalouli, Maroua
    Alwasel, Saleh H.
    Harrath, Abdel Halim
    [J]. EPMA JOURNAL, 2021, 12 (04) : 545 - 558
  • [8] GraphEGFR: Multi-task and transfer learning based on molecular graph attention mechanism and fingerprints improving inhibitor bioactivity prediction for EGFR family proteins on data scarcity
    Boonyarit, Bundit
    Yamprasert, Nattawin
    Kaewnuratchadasorn, Pawit
    Kinchakawat, Jiramet
    Prommin, Chanatkran
    Rungrotmongkol, Thanyada
    Nutanong, Sarana
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2024, 45 (23) : 2001 - 2023
  • [9] Designing cytochrome P450 enzymes for use in cancer gene therapy
    Carrera-Pacheco, Saskya E.
    Mueller, Alexander
    Puente-Pineda, Juan A.
    Zuniga-Miranda, Johana
    Guaman, Linda P.
    [J]. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 2024, 12
  • [10] Machine Learning Interpretability: A Survey on Methods and Metrics
    Carvalho, Diogo, V
    Pereira, Eduardo M.
    Cardoso, Jaime S.
    [J]. ELECTRONICS, 2019, 8 (08)